View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9594_2 (Length: 795)
Name: NF9594_2
Description: NF9594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9594_2 |
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Alignment Details
Target: chr4 (Bit Score: 564; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 82 - 764
Target Start/End: Original strand, 51349587 - 51350270
Alignment:
| Q |
82 |
taggaacttttatgaacacattcattggcacttcaacaagtgtgtcggacactaaatgttgaagtgtcgatgaatgtgttggtaaaagttccttgttgga |
181 |
Q |
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| T |
51349587 |
taggaacttttaggaacacattcattgacacttcaacaagtgtgtcggacactaaatgttgaagtgtcaatgaatgtgttggtaaaagttccttgttgga |
51349686 |
T |
|
| Q |
182 |
ccgagaaggtttgttgttgtagctatgctaaacacgtgttcatgattattgtacttagaagtatggtatatgatgcaccattcttgttgagcagctttac |
281 |
Q |
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| T |
51349687 |
ccgagaaggtttgttgttgtagctatgttaaacacgtgttcatgattattgtacatagaagtatggcatatgatgcaccattcttgtt-agaatctttac |
51349785 |
T |
|
| Q |
282 |
tttttctacttgtgtaactgtgcacactttccattttcttgcttctgtgccttcatgtag---aatggcagctttgtctagaacactgtttgtgcacaaa |
378 |
Q |
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| T |
51349786 |
tttttctacttgtgtaactgtgcacactttccattttcttgcttctgtgccttcatgtagtagaatggcagctttgtctagaacactgtttgtgcacaaa |
51349885 |
T |
|
| Q |
379 |
gttgcatgtagaagagatttatattcttgaattgaatgtgactttcatatatgcaataatgatgcacttcaattgcaacagttcattgtaataatgaatt |
478 |
Q |
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| T |
51349886 |
gttgcatgtagaagagatttatattcttgaattgaatgtgactttcatatatgcaataatgatgcacttcaattgcaacagttcatagtaataatgaatt |
51349985 |
T |
|
| Q |
479 |
tatctcagaatttatgttttacaaattgtcaccctaat-nnnnnnnnccggttctatactaaaggtgcaacttacacagcaaattatttaatgcttttac |
577 |
Q |
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| T |
51349986 |
tatctcagaatttatgttttacaaattgtcaccctaataaaaaaaaaccggttctatactattggtgcaacttacacagcaaattatttaatgcttttac |
51350085 |
T |
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| Q |
578 |
tttttcaaaaagaaaaactttctaacataatacaacactttctattactacatttgcatgttcggaatgacagaataatatcacagtgacattgatttta |
677 |
Q |
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| T |
51350086 |
tttttcaaaaagaaaaactttctaacataatacaacactttctattactacatttgcatgttcggaatgacag---aatatcacagtgacattgatttta |
51350182 |
T |
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| Q |
678 |
ttagagctgcaaagtatagtttctgtcaaattcacagaagcacaccgcgattctatcaaactcacc-taaatgcgaatgtgcactcat |
764 |
Q |
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| T |
51350183 |
ttagagctgcaaagtatagtttctgtcaaattcacagaagcacaccgcgattctatcaaattcaccataaatgcgaatgtgcactcat |
51350270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 151 - 417
Target Start/End: Original strand, 51359465 - 51359716
Alignment:
| Q |
151 |
atgaatgtgttggtaaaagttccttgttggaccgagaaggtttgttgttgtagctatgctaaacacgtgttcatgattattgtacttagaagtatggtat |
250 |
Q |
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| T |
51359465 |
atgaatgtgttcataaaggttccttgttggacagaaaaggtttgtagttgt------gctaaacatgtgttcatgagtattgtacttagaaggatag--- |
51359555 |
T |
|
| Q |
251 |
atgatgcaccattcttgttgagcagctttactttttctacttgtgtaactgtgcacactttccattttcttgcttctgtgccttcatgtagaatggcagc |
350 |
Q |
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| T |
51359556 |
-----gcatcattcttgtt-agaatctttacttcttctacttgtgttactgtacacaccctccattttattgcttctgtgtctttaggtagagtggctgc |
51359649 |
T |
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| Q |
351 |
tttgtctagaacactgtttgtgcacaaagttgcatgtagaagagatttatattcttgaattgaatgt |
417 |
Q |
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| T |
51359650 |
tttgtctagaaccctgtttttgcacaaaattacatgtgtaagaaatgtataagcttgaattgaatgt |
51359716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 56
Target Start/End: Original strand, 51349532 - 51349561
Alignment:
| Q |
27 |
acgattacatccacttgaaggaaatatatg |
56 |
Q |
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| T |
51349532 |
acgattacatccacttgaaggaaatatatg |
51349561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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