View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9594_3 (Length: 605)
Name: NF9594_3
Description: NF9594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9594_3 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 29 - 583
Target Start/End: Complemental strand, 2592172 - 2591619
Alignment:
| Q |
29 |
gatgttttaggacttgttaatgttattgttggaagtcctgcttcaagcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtc |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2592172 |
gatgttctaggacttgttaatgttattgttggaagtcctgcttcaagcaagtgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtc |
2592073 |
T |
|
| Q |
129 |
tttgtaccgctattaaggctaatgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatgg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
2592072 |
tttgtaccgctattaaggctaatgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtgaaaaatctgttcctaatgg |
2591973 |
T |
|
| Q |
229 |
tttccaatgttcgtagggtttcatcttcatgtgaaaggttc-aagccatacgagtacttatgttactactactttcattatcgtttttattttacttctt |
327 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2591972 |
tttccaatgttcatagagtttcatcttcatgtgaaaggttcaaagccatacgagtacttatgttactactactttcattatcgtttttattttacttctt |
2591873 |
T |
|
| Q |
328 |
gtttatgtgcacgattgactttcacgaaattatagtatataatttagttggactttgaatgcgtagcttttgtcaaaatcatggtatatatcaccgtgat |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| | |||||||||||| |
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|
| T |
2591872 |
gtttatgtgcacgattgactttcacgaaattatagtatataattttgttggattttgaatgcgtggcttttgtcaaaatcatgg--tgtatcaccgtgat |
2591775 |
T |
|
| Q |
428 |
ttagttaaattcatcatcaattcaaatatgcattatatctattttagtgtggggtgtatgtaattttaataaatggggcaagcatgtttgcctcatctag |
527 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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|
| T |
2591774 |
ttagttaaattcatcatcaattcaaatatgcattatatctattttagtgtggggtgtatatcattttaataaatggggcaagcatgtttgcctcatctag |
2591675 |
T |
|
| Q |
528 |
caactgtgttcttttaattttaatgaataaatttggccaacttttcatttgatgat |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2591674 |
caactgtgttcttttaattttaatgaataaatttggccaacttttcatttgatgat |
2591619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 29 - 571
Target Start/End: Complemental strand, 2599926 - 2599372
Alignment:
| Q |
29 |
gatgttttaggacttgttaatgttattgttggaagtcctgcttcaagcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtc |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2599926 |
gatgttctaggacttgttaatgttattgttggaattcctgcttcaagcaattgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtc |
2599827 |
T |
|
| Q |
129 |
tttgtaccgctattaaggctaatgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatgg |
228 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2599826 |
tttgtaccgctattaaggctaacgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatgg |
2599727 |
T |
|
| Q |
229 |
tttccaatgttcgtagggtttcatcttcatgtgaaaggttcaagccatacgagtacttatgttactactactttcattatcgtttttattttacttcttg |
328 |
Q |
| |
|
|||||||||||| ||| || ||||||||||||||||||||||||| | ||||||||||||||||||||||||| | ||||||||||||||| ||| |
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|
| T |
2599726 |
tttccaatgttcatagagt------ttcatgtgaaaggttcaagccataccaatacttatgttactactactttcattgttgtttttattttacttattg |
2599633 |
T |
|
| Q |
329 |
tttatgtgcacgatt-----------gactttcacgaaattatagta------tataatttagttggactttgaatgcgtagcttttgtcaaaatcatgg |
411 |
Q |
| |
|
||| ||||||||||| ||||| || |||||||||||| |||||||| ||| || |||| || || ||||||||||||||| || |
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|
| T |
2599632 |
tttctgtgcacgattgaaattacaccgacttgcatgaaattatagtataatactataattttgtttgagtttgggtgtgtgacttttgtcaaaatcacgg |
2599533 |
T |
|
| Q |
412 |
t-atatatcaccgtgatttagttaaattcatcatcaattcaaatatgcattatatctattttagtgtggggtgtatgtaattttaataaatggggcaagc |
510 |
Q |
| |
|
| | | |||| ||| ||| | ||||||||||||| ||||||||||||| |||||||||||| ||||||| | | ||| || | ||||||| ||| |||| |
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|
| T |
2599532 |
tggtgtgtcactgtgtttttgctaaattcatcatcgattcaaatatgcactatatctattttggtgtgggatatgtgtcatgtcaataaatagggtaagc |
2599433 |
T |
|
| Q |
511 |
atgtttgcctcatctagcaactgtgttcttttaattttaatgaataaatttggccaacttt |
571 |
Q |
| |
|
||||||||||||| || |||| |||||||||||||||||| |||||||||||| |||||| |
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|
| T |
2599432 |
ctgtttgcctcatcgagtaactttgttcttttaattttaataaataaatttggcaaacttt |
2599372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 29 - 580
Target Start/End: Complemental strand, 2578423 - 2577874
Alignment:
| Q |
29 |
gatgttttaggacttgttaatgttattgttggaagtcctgcttcaagcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtc |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2578423 |
gatgttctaggacttgttaatgttattgttggaagtcctgcttcaagcaactgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtc |
2578324 |
T |
|
| Q |
129 |
tttgtaccgctattaaggctaatgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatgg |
228 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2578323 |
tttgtaccgctattaaggctaacgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatgg |
2578224 |
T |
|
| Q |
229 |
tttccaatgttcgtagggtttcatcttcatgtgaaaggttcaagccatacgagtacttatgttactactactttcattatcgtttttattttacttcttg |
328 |
Q |
| |
|
|||||||||||| ||| || ||||||||||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||| || |
|
|
| T |
2578223 |
tttccaatgttcatagagt------ttcatgtgaaaggttcaagccataccaatacttatgttac-aatactttcattatcgtttttattttacttaatg |
2578131 |
T |
|
| Q |
329 |
tttatgtgcacgattga-----------ctttcacgaaattatagta----tataatttagttggactttgaatgcgtagcttttgtcaaaat--catgg |
411 |
Q |
| |
|
|||||||| | |||||| |||| |||||||||||||| |||||||| |||| | ||| | | || | |||||||||||| || || |
|
|
| T |
2578130 |
tttatgtgtatgattgaaattacggtggctttaacgaaattatagtaatactataattttgttgaagttt-cacgagttgtttttgtcaaaatcacacgg |
2578032 |
T |
|
| Q |
412 |
tatatatcaccgtgatttagttaaattcatcatcaattcaaatatgcattatatctattttagtgtggggtgtatgtaattttaataaatggggcaagca |
511 |
Q |
| |
|
| ||| ||||||| |||||||||| | ||||||||||| |||| |||||| || ||||| | || ||| |||||||||||||||| ||||| |
|
|
| T |
2578031 |
----tgtcattgtgattttgttaaattcaccctcaattcaaatctgcactatatc----ttggtgtgagatg--tgttattttaataaatggggtaagca |
2577942 |
T |
|
| Q |
512 |
tgtttgcctcatctagcaactgtgttcttttaattttaatgaataaatttggccaacttttcatttgat |
580 |
Q |
| |
|
||||||||||||||||||| | |||| ||||||||||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
2577941 |
tgtttgcctcatctagcaattttgttgttttaattttaataaataaatttggcgaac-tttcatttgat |
2577874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 29 - 295
Target Start/End: Complemental strand, 2608462 - 2608202
Alignment:
| Q |
29 |
gatgttttaggacttgttaatgttattgttggaagtcctgcttcaagcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtc |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| |||||| || |||||| |||| | |
|
|
| T |
2608462 |
gatgttttaggacttgttaatgttattgttggaagtcctgcttcaagcaagtgttgtgcattgcttcaaggtttggttgatttagatgcagcaatttgcc |
2608363 |
T |
|
| Q |
129 |
tttgtaccgctattaaggctaatgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatgg |
228 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
2608362 |
tttgtactgctattaaggctaatgttcttggtatcaacttgaatgttcctatcacactcagtctcctacttagtgcttgtgaaaaatctgttccttcagg |
2608263 |
T |
|
| Q |
229 |
tttccaatgttcgtagggtttcatcttcatgtgaaaggttcaagccatacgagtacttatgttacta |
295 |
Q |
| |
|
|||||||||||| ||| | ||||||| |||||||||| |||||| | |||||||||||||| |
|
|
| T |
2608262 |
tttccaatgttcatag------actttcatgtcaaaggttcaaaccatactaatacttatgttacta |
2608202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 499 - 551
Target Start/End: Complemental strand, 2607969 - 2607917
Alignment:
| Q |
499 |
aatggggcaagcatgtttgcctcatctagcaactgtgttcttttaattttaat |
551 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
2607969 |
aatggggtaagcctgtttgcctcatttagcaactttgttcttttaatcttaat |
2607917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 44 - 238
Target Start/End: Original strand, 49329036 - 49329233
Alignment:
| Q |
44 |
gttaatgttattgttggaagtcctgcttca---agcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagtttgtctttgtaccgcta |
140 |
Q |
| |
|
||||||||| || |||||| |||| ||||| || ||||||||| |||||||| | ||||||||||||||||| || ||| |||||||||| || || |
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|
| T |
49329036 |
gttaatgttgttattggaaatcctccttcaggtagtaaatgttgtgcattgattaagggtttggctgatttggaggctgcactttgtctttgcactgcac |
49329135 |
T |
|
| Q |
141 |
ttaaggctaatgttcttggtatcaacttgaatgtgcctgtcacacttagtctcctacttagtgcttgtcaaaaatctgttcctaatggtttccaatgt |
238 |
Q |
| |
|
|||||||||| || ||||| |||||| ||||||||||| |||| || || | || |||||||| ||||||||| | || ||| ||||||||||||| |
|
|
| T |
49329136 |
ttaaggctaacgtgcttgggatcaacctgaatgtgcctatcactctcagcttgctccttagtgcatgtcaaaaaaccgtccctcctggtttccaatgt |
49329233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 29 - 171
Target Start/End: Original strand, 49331297 - 49331442
Alignment:
| Q |
29 |
gatgttttaggacttgttaatgttattgttggaagtcctgcttca---agcaaatgttgtacattgattcaaggtttggctgatttggacgcagcagttt |
125 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| |||||||||| || || |||||| || | || ||||||||||||||||||| || ||| ||| |
|
|
| T |
49331297 |
gatgttttaggactggttaatgttgttgttggaaatcctgcttcaggtagtaattgttgtgcaataatcaaaggtttggctgatttggatgctgcacttt |
49331396 |
T |
|
| Q |
126 |
gtctttgtaccgctattaaggctaatgttcttggtatcaacttgaa |
171 |
Q |
| |
|
||||||| || || |||||||| ||||| ||||| || |||||||| |
|
|
| T |
49331397 |
gtctttgcactgcaattaaggccaatgtgcttggaataaacttgaa |
49331442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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