View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9594_4 (Length: 503)
Name: NF9594_4
Description: NF9594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9594_4 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 40917551 - 40917278
Alignment:
| Q |
1 |
atgacttggaatataactaatgaaacgtgttcattattgtttcccagtgtgaacatactaattattcacaaacacattaacccacaataatctacgaatg |
100 |
Q |
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| T |
40917551 |
atgacttggaatataactaatgaaacgtgttcattattgtttcccagtgtgaacatactaattattca-------------------taatctacgaatg |
40917471 |
T |
|
| Q |
101 |
tcgctaataatttgcaaatatttaatttttatttttgactaaacatgtgacctgttattgtatttacttaattacaggattaatcaaataccttcactcc |
200 |
Q |
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| T |
40917470 |
tcgctaataatttgcaaatatttaatttttatttttgactaaacatgtgacctgttattgtacttaattaattacaggattaatcaaataccttcactcc |
40917371 |
T |
|
| Q |
201 |
tactactagaagcaatttccacttcaaggctttaaccaacctcaacacnnnnnnncctacttctggtttttcctacttttggccacgttgatt |
293 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
40917370 |
tactactagaagcaaactccacttcaaggctttaaccaacctcaacactttttttcctacttctggtttttcctacttttggccatgttgatt |
40917278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 296 - 499
Target Start/End: Complemental strand, 40909131 - 40908926
Alignment:
| Q |
296 |
tcataactttataatatacaaataatacaatgaagcatgttacatctaaaaacaaatcatacactacag-aacagtaatcgttcctttttaaagtgattc |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40909131 |
tcataactttataatatacaaataatacaatgaagcatgttacatctaaaaacaaatcatacactacaggaacagtaatcgttcctttttaaagtgattc |
40909032 |
T |
|
| Q |
395 |
ggttcaaatcaatccctatcttatctctaggttcaaccagtacaaggaatttgtgatttcccaagctgtctctaactgtgcaagcc-ccccgcgccactc |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |
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| T |
40909031 |
ggttcaaatcaatccctatcttatctctaggttcaaccagtacaaggaatttgtgatttctcaagccgtctctaactgtgcaagcccccccgcgccactc |
40908932 |
T |
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| Q |
494 |
tctctg |
499 |
Q |
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|||||| |
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|
| T |
40908931 |
tctctg |
40908926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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