View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9594_6 (Length: 419)
Name: NF9594_6
Description: NF9594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9594_6 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 29 - 399
Target Start/End: Complemental strand, 50573738 - 50573368
Alignment:
| Q |
29 |
gaaaggttggagaaacagaagctagcggctgataagggtaaggcggagaaacctacagataatgccgataacaaggtaccaaattattttgtttttaggt |
128 |
Q |
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| T |
50573738 |
gaaaggttggagaaacagaagctagcgggtgataagggtaaggcggagaaacctacagataatgccgataacaaggtaccaaattattttgtttttaggt |
50573639 |
T |
|
| Q |
129 |
tattgatttcaatatttctttctgtatattttgggtctgattaaaaccagatttgtgatatattattattgtgttagttaccacttctaatatgaacttt |
228 |
Q |
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| T |
50573638 |
tattgatttcaatatttctttctgtatattttgggtctgattaaaaccagatttgtgatctattattattgtgttagttaccacttctaatatgaacttt |
50573539 |
T |
|
| Q |
229 |
tgatttggtgtatttttggatttgttaatttctgtttagtgcaaatcttaatannnnnnnnnagatttgaagctatttgaagtcgtgtcatatgatggtt |
328 |
Q |
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| T |
50573538 |
tgatttggtgtatttttggatttgttaatttctgtttagtgcaaattttaatatttttttttagatttgaagctatttgaagttgtatcatatgatggtt |
50573439 |
T |
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| Q |
329 |
cctatgattcatatcttcaaatttattcaattttttacgcttatttcacgcattaaagtttaggatgatgt |
399 |
Q |
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| T |
50573438 |
cctatgattcatatcttcaaatttattcaattttttacgcttatttcacgcattaaagtttaggaagatgt |
50573368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 195 - 399
Target Start/End: Original strand, 38702090 - 38702294
Alignment:
| Q |
195 |
tattgtgttagttaccacttctaatatgaacttttgatttggtgtatttttggatttgttaatttctgtttagtgcaa-atcttaatannnnnnnnnaga |
293 |
Q |
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|||||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | || | || |
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| T |
38702090 |
tattgtgtatgttaccatttctgatatgaacttttgatttggtgtacttttggatttgttactttctgtttagtgcaattttttttttttttttttaagt |
38702189 |
T |
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| Q |
294 |
tttgaagctatttgaagtcgtgtcatatgatggttcctatgattcatatcttcaaatttattcaattttttacgcttatttcacgcattaaagtttagga |
393 |
Q |
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||||||||||||||||| | |||||| |||||| ||||||||||||||| |||||||||||||||||||| |||||||| | |||||||| |||||| |
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| T |
38702190 |
attgaagctatttgaagttttatcatatagtggttcatatgattcatatcttaaaatttattcaattttttacacttatttc-cacattaaagcttagga |
38702288 |
T |
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| Q |
394 |
tgatgt |
399 |
Q |
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||||| |
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| T |
38702289 |
agatgt |
38702294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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