View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9594_9 (Length: 389)
Name: NF9594_9
Description: NF9594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9594_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 31 - 389
Target Start/End: Complemental strand, 41082876 - 41082514
Alignment:
| Q |
31 |
aacatttttcataaatatattggatgatttagcatcttttagtttttgccttgttaactggttaagctttgttcataatcttttttgaaaatatttgtta |
130 |
Q |
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| T |
41082876 |
aacatttttcataaatatattggatgatttagcatcttttagtttttgccttgttaactggttaagctttgttcataatcttttttgaaaatatttgtta |
41082777 |
T |
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| Q |
131 |
attcttagttaagttagtcatcagtgtaatctttttcatttcatat----ggactgtatgtataaatagagtcttttgtattcataactaatcagttgat |
226 |
Q |
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| T |
41082776 |
attcttagttaagttagtcatcagtgtaatctttttcatttcatatatatggactgtatgtataaatagagtcttttgtattcataactaatcagttgat |
41082677 |
T |
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| Q |
227 |
taagttatcaataaatgaagtttcagtaaaatagaaacatagcaaacttagatttatgagataactaactgctttaagaaacagcacatagtcttaatta |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41082676 |
taagttatcaataaatgaagtttcagtaaaatagaaacatagcaaacttagatttatgagataactaactgctttaagaaacagcacatagtcttaatta |
41082577 |
T |
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| Q |
327 |
taacatggtttcttaagatattgaatttgttacctaaccaaattttaatatttctaagtacat |
389 |
Q |
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| T |
41082576 |
taacatggtttcttaagatattgaatttgttacctaaccaaattttaatatttctaagtacat |
41082514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 95
Target Start/End: Complemental strand, 41082961 - 41082875
Alignment:
| Q |
9 |
caatgaatataatgaattgttaaacatttttcataaatatattggatgatttagcatcttttagtttttgccttgttaactggttaa |
95 |
Q |
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| T |
41082961 |
caatgaagataatgaattgttaaacattttccataaatatattcgatgatttagcatcttttagtttttgccttgttaactggttaa |
41082875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 37067991 - 37067907
Alignment:
| Q |
159 |
atctttttcatt-tcatatggactgtatgtataaatagagtcttttgtattcataactaatcagttgattaagttatcaataaatga |
244 |
Q |
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| T |
37067991 |
atcttcttcattatcatatggactc-atgtgtaaatagagtcctt-gtattcataattaatcaattgatcaagttatcaataaatga |
37067907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 37060499 - 37060431
Alignment:
| Q |
174 |
tatggact-gtatgtataaatagagtcttttgtattcataactaatcagttgattaagttatcaataaatga |
244 |
Q |
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| T |
37060499 |
tatggactagtatgtataaatagagtct---gtattcattattaatcaattggtcaagttatcaataaatga |
37060431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 45369959 - 45369916
Alignment:
| Q |
169 |
tttcatatggactg-tatgtataaatagagtcttttgtattcat |
211 |
Q |
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| T |
45369959 |
tttcatatggactcatatgtataaatagagtcttttgtattcat |
45369916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 47823253 - 47823180
Alignment:
| Q |
169 |
tttcatatggactgtatgtataaatagagtcttttgtattcataactaatcagttgattaagttatcaataaatg |
243 |
Q |
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| T |
47823253 |
tttcatatggactc-atgtataagtcgagtcttttgtattcattattcatcaattgatcaagttatcactaaatg |
47823180 |
T |
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