View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9594_low_1 (Length: 487)
Name: NF9594_low_1
Description: NF9594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9594_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 62 - 470
Target Start/End: Complemental strand, 46136626 - 46136233
Alignment:
| Q |
62 |
ctctgtttactaacactagagtgaagccttttcactgccatggcaaacattcatccactatggcatttcaccaactcttatatgttacattccgcgtggt |
161 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
46136626 |
ctctgtttactaacactagagcgaagccttttcactgccatggcaaacattcatccactatggcatttcaccgactcttatatgttccattccgtgtggt |
46136527 |
T |
|
| Q |
162 |
aaataacgactaggaatataacttccctttgaagtcaagtctcatctgcgaaaaatctggacatcagctaaatgcaactaccacaaagggcaagtacacc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46136526 |
aaataacgactaggaatataacttccctttgaagtcaagtctcatctgcgaaaaatcttgacatcagctaaatgcaactaccacaaagggcaagtacacc |
46136427 |
T |
|
| Q |
262 |
agtcgtatcaagtaataaaagtgataagtaaggtagtctttatatagattacgcttcaatactttcgactgcatatttgttgcttgattgaacatgacac |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46136426 |
agtcgtatcaagtaataaaagtgataagtaaggtagtctttatatagattacgcttcaatactttcgactgcatatttgttgctcgattgaacatgacaa |
46136327 |
T |
|
| Q |
362 |
gaagggtgtaaaattgaggtaatgagaatgctgtaaaatcaaatgacacgcaatttagtgacattggggggatagccataatgaaatcaaagaagcttat |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46136326 |
gaagggtgtaaaattgaggtaatgagaatgctgtaaaatcaaat---------------gacattggggggatagccataatgaaatcaaagaagcttat |
46136242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University