View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9594_low_2 (Length: 341)
Name: NF9594_low_2
Description: NF9594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9594_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 46891387 - 46891708
Alignment:
| Q |
1 |
aaaaagcattcctcttactaccaattttactaaaccattttcagcagatacaatgtccccacatttcccacaaaaattaataagcccattcgcaacagaa |
100 |
Q |
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| T |
46891387 |
aaaaaacattcctcttactaccaattttgctaaaccattttcagcagatacaatgtccccacatttcccacaaaaactaataagcccattcgcaacagaa |
46891486 |
T |
|
| Q |
101 |
acatcctctttctatccaaaatgaattataaatgaatgtaaccgtcacccgtgattcaatctcaacaagtcaacacaggcattcaggaccgcacaaaact |
200 |
Q |
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| T |
46891487 |
acatcctctttatatccaaaatgaattataaatgaatgtaaccgtcacccgtgattcaatctcaacaagtcaacacaggcattcaggaccgcacaaaact |
46891586 |
T |
|
| Q |
201 |
tcatcacattagcaacagaaatattcacgaacgcacataacataagagaatttggctctccatgcacacatagaaactccttaaacacttcaatcgcatc |
300 |
Q |
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| T |
46891587 |
tcatcacattagcaacagaaatattcacgaacgcacataacataagagaatttggctctccatgcacacatagaaactccttaaacacttcaattgcatc |
46891686 |
T |
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| Q |
301 |
catagaacgccaatcttgaact |
322 |
Q |
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||||| |||||||||||||||| |
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| T |
46891687 |
catagtacgccaatcttgaact |
46891708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 39 - 198
Target Start/End: Complemental strand, 46921259 - 46921100
Alignment:
| Q |
39 |
tttcagcagatacaatgtccccacatttcccacaaaaattaataagcccattcgcaacagaaacatcctctttctatccaaaatgaattataaatgaatg |
138 |
Q |
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| T |
46921259 |
tttcagcagatacaatgtccccacattttccatagaaatcaataagcccattcgcaacagaaacatcctctttatatccacaccgaacaataaaagcatg |
46921160 |
T |
|
| Q |
139 |
taaccgtcacccgtgattcaatctcaacaagtcaacacaggcattcaggaccgcacaaaa |
198 |
Q |
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| T |
46921159 |
taactgacgcccgagattcaatctcatcatatcaacgcaagcattcaaaaacgcacaaaa |
46921100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 39 - 185
Target Start/End: Complemental strand, 38311416 - 38311270
Alignment:
| Q |
39 |
tttcagcagatacaatgtccccacatttcccacaaaaattaataagcccattcgcaacagaaacatcctctttctatccaaaatgaattataaatgaatg |
138 |
Q |
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|||||||||||||||||||||||||||| ||| | |||| ||||||||||||||||||||||||||||||||| |||||| | ||| ||||| | ||| |
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| T |
38311416 |
tttcagcagatacaatgtccccacattttccatagaaatcaataagcccattcgcaacagaaacatcctctttatatccacaccgaacaataaaagcatg |
38311317 |
T |
|
| Q |
139 |
taaccgtcacccgtgattcaatctcaacaagtcaacacaggcattca |
185 |
Q |
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| T |
38311316 |
taactgacgcccgagattcaatctcaccatatcaacgcaagcattca |
38311270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 38311249 - 38311195
Alignment:
| Q |
248 |
gaatttggctctccatgcacacatagaaactccttaaacacttcaatcgcatcca |
302 |
Q |
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| T |
38311249 |
gaattcggctctccatgcacacaaagaaactccttaaacgccacaatcgcatcca |
38311195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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