View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9594_low_3 (Length: 241)

Name: NF9594_low_3
Description: NF9594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9594_low_3
NF9594_low_3
[»] chr2 (13 HSPs)
chr2 (1-224)||(30870402-30870625)
chr2 (1-223)||(26353800-26354024)
chr2 (34-223)||(8910110-8910302)
chr2 (2-217)||(17353773-17353987)
chr2 (54-223)||(29454050-29454218)
chr2 (156-223)||(19033864-19033931)
chr2 (2-69)||(34213880-34213946)
chr2 (116-202)||(34214187-34214273)
chr2 (116-219)||(21430743-21430846)
chr2 (2-82)||(19033705-19033786)
chr2 (116-223)||(41341924-41342030)
chr2 (32-74)||(21430887-21430929)
chr2 (2-82)||(41342066-41342145)
[»] chr1 (11 HSPs)
chr1 (1-223)||(25878404-25878626)
chr1 (1-223)||(28007156-28007381)
chr1 (118-219)||(30936987-30937088)
chr1 (118-223)||(9343078-9343183)
chr1 (1-152)||(10918009-10918163)
chr1 (2-82)||(45438519-45438599)
chr1 (3-74)||(32991969-32992040)
chr1 (2-72)||(30937137-30937207)
chr1 (181-223)||(10917959-10918001)
chr1 (119-171)||(32991873-32991925)
chr1 (105-145)||(33372642-33372682)
[»] chr3 (10 HSPs)
chr3 (1-223)||(22604080-22604301)
chr3 (34-223)||(11559468-11559658)
chr3 (34-223)||(11568737-11568927)
chr3 (15-223)||(54377987-54378197)
chr3 (15-223)||(50093239-50093446)
chr3 (114-223)||(33757098-33757207)
chr3 (117-221)||(25746042-25746146)
chr3 (118-223)||(54783600-54783704)
chr3 (133-214)||(8414242-8414322)
chr3 (2-82)||(54783486-54783566)
[»] chr8 (13 HSPs)
chr8 (1-223)||(4975028-4975250)
chr8 (1-223)||(15075546-15075768)
chr8 (1-223)||(2751741-2751958)
chr8 (34-223)||(9293455-9293642)
chr8 (56-223)||(20990559-20990728)
chr8 (2-213)||(13322584-13322793)
chr8 (146-217)||(25380811-25380882)
chr8 (149-219)||(25689291-25689360)
chr8 (119-218)||(38758847-38758947)
chr8 (118-195)||(3687264-3687342)
chr8 (33-82)||(25380976-25381026)
chr8 (1-82)||(25690412-25690494)
chr8 (112-154)||(25690338-25690380)
[»] chr4 (4 HSPs)
chr4 (1-223)||(22433879-22434102)
chr4 (2-223)||(19898206-19898425)
chr4 (1-223)||(9591803-9592025)
chr4 (117-223)||(56490798-56490906)
[»] chr7 (3 HSPs)
chr7 (37-223)||(8543888-8544076)
chr7 (2-202)||(23428721-23428920)
chr7 (118-214)||(42594246-42594341)
[»] scaffold0092 (1 HSPs)
scaffold0092 (33-223)||(53720-53912)
[»] chr5 (10 HSPs)
chr5 (33-223)||(41249771-41249962)
chr5 (33-217)||(29069095-29069281)
chr5 (127-191)||(26708520-26708584)
chr5 (127-191)||(26978254-26978318)
chr5 (1-82)||(26708781-26708863)
chr5 (1-82)||(26978515-26978597)
chr5 (33-75)||(37192989-37193031)
chr5 (1-82)||(7031272-7031352)
chr5 (172-218)||(37193029-37193075)
chr5 (116-172)||(7031386-7031442)
[»] chr6 (5 HSPs)
chr6 (116-223)||(292171-292278)
chr6 (116-223)||(11083017-11083124)
chr6 (116-219)||(17371727-17371831)
chr6 (1-82)||(11082901-11082983)
chr6 (2-82)||(292063-292143)
[»] scaffold0070 (1 HSPs)
scaffold0070 (145-219)||(39895-39969)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 30870625 - 30870402
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnncaccaccaac 100  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  30870625 atttataattaccctaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaaaattttttcaccaccaac 30870526  T
Q  101 ataggtcaattacaacctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggtta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30870525 ataggtcaattacaacctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatatgctctaagataattggtta 30870426  T
Q  201 aagaattcataaaagaaaattttg 224  Q
    ||||||||||||||||||||||||    
T  30870425 aagaattcataaaagaaaattttg 30870402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 26354024 - 26353800
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnn-caccaccaa 99  Q
    |||||||||||   ||||||||||| || || |||||||||||| |||||||  |||||||||| ||||||||||||| |||         |||||||||    
T  26354024 atttataattatcctaaaatgttgaatttttaaaaatatttgtctatttctagcagagtataaacaatataaccataaataattattttttcaccaccaa 26353925  T
Q  100 catagg-tcaattacaacctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggt 198  Q
    | |||  ||| | |||| |||||||||||||||||| |||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  26353924 cgtagcatcagtcacaatctttttcaacaaatataaaaatagtttatattataatagtagttttttggtcttgccaacgatgtgctctaagataattggt 26353825  T
Q  199 taaagaattcataaaagaaaatttt 223  Q
    |||||| |||||||||||| |||||    
T  26353824 taaagatttcataaaagaatatttt 26353800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 34 - 223
Target Start/End: Complemental strand, 8910302 - 8910110
Alignment:
Q  34 aaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnncaccaccaacatag-gtcaattacaacctttttcaacaaatat 132  Q
    ||||||||||||||||||   | ||||||||||||||||||||||| |         |||||||||| ||| |||| | |||||||||||||||||||||    
T  8910302 aaatatttgtccatttctcgcatagtataaaaaatataaccataataattattttttcaccaccaacgtagcgtcattcacaacctttttcaacaaatat 8910203  T
Q  133 aagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaat--tcataaaagaaaatttt 223  Q
    ||||||| ||||||||||| || ||||| | |||||||||||||||| |||||||||||||||||||||||| |  ||||||||||| |||||    
T  8910202 aagaatagtttatattatagtagtagttgtgtggtcttgccaacgatatgctctaagataattggttaaagattgatcataaaagaatatttt 8910110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 17353773 - 17353987
Alignment:
Q  2 tttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnnca-ccaccaac 100  Q
    ||||||||| || |||||||||||||| | ||| |||||| || |||||||  |||||||||||||||||||| |||||||        || ||||||||    
T  17353773 tttataattgctctaaaatgttgatttttgtaagatatttttctatttctagcagagtataaaaaatataaccttaattaattttttttcaaccaccaac 17353872  T
Q  101 ataggtcaattacaa--cctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggt 198  Q
        |||||| |||   | ||||||||||||||||||||||||||| | ||||||| ||||||||||  ||||| |||||  |||||||||| |||||||    
T  17353873 ----gtcaatcacatagcatttttcaacaaatataagaataatttagaatataatagtagttttatgaccttgctaacgacatgctctaagaaaattggt 17353968  T
Q  199 taaagaattcataaaagaa 217  Q
    |||||| ||||||||||||    
T  17353969 taaagatttcataaaagaa 17353987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 29454050 - 29454218
Alignment:
Q  54 tagagtataaaaaatataaccataattaaannnnnnn-caccaccaacatagg--tcaattacaacctttttcaacaaatataagaataatttatattat 150  Q
    |||||||||||||||||||||||||||||         |||||||||| |||   ||| | |||||||||||||| ||| ||||||||| ||||||||||    
T  29454050 tagagtataaaaaatataaccataattaattattttttcaccaccaacgtagcgttcagtcacaacctttttcaaaaaa-ataagaatagtttatattat 29454148  T
Q  151 aatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaaaatttt 223  Q
    |||| |||||||||||| ||||||||||  ||  || ||||||||||||||||| ||||||||||||||||||    
T  29454149 aatagtagttttatggtattgccaacga-atg--ctgagataattggttaaagatttcataaaagaaaatttt 29454218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 19033864 - 19033931
Alignment:
Q  156 tagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaaaatttt 223  Q
    ||||||||||||||||| |||||| | |||| ||| ||||||||||||||||||||||||||||||||    
T  19033864 tagttttatggtcttgctaacgatatactcttagaaaattggttaaagaattcataaaagaaaatttt 19033931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 34213880 - 34213946
Alignment:
Q  2 tttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaata 69  Q
    ||||||||| ||||||||||||||||| |||||||||||| |||| ||||| ||||||||||||||||    
T  34213880 tttataattgctttaaaatgttgattt-tttaaaatatttttccacttctagtagagtataaaaaata 34213946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 34214187 - 34214273
Alignment:
Q  116 cctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaa 202  Q
    |||||||||||||||||||||||| |||| |  |||||| |||||||| |||||||| |||||| || | ||||| |||||||||||    
T  34214187 cctttttcaacaaatataagaatagtttagaacataatagtagttttagggtcttgctaacgatatgttttaagagaattggttaaa 34214273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 21430846 - 21430743
Alignment:
Q  116 cctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaag 215  Q
    ||||||||||||||||| |||||| |||  |  |||||| |||||||||||| | || |||||| || ||||||| ||||||||||||| ||| |||||     
T  21430846 cctttttcaacaaatatgagaatagttttgaacataatagtagttttatggtttggctaacgatatgttctaagagaattggttaaagatttcctaaaaa 21430747  T
Q  216 aaaa 219  Q
    ||||    
T  21430746 aaaa 21430743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 19033705 - 19033786
Alignment:
Q  2 tttataattactttaaaatgttgatt-tgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaa 82  Q
    ||||||||| || ||||||||||||| | ||| |||||||| |||||||| |  ||||||||||||||| ||||||||||||    
T  19033705 tttataattgctctaaaatgttgattcttttttaaatatttctccatttccagaagagtataaaaaatagaaccataattaa 19033786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 41342030 - 41341924
Alignment:
Q  116 cctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaag 215  Q
    ||||||||||||| ||||| |||| |||| | ||| |||  ||||||| ||| |||  | |||| || | ||||| ||||||||||||| ||||||||||    
T  41342030 cctttttcaacaattataataatagtttagaatatcatagcagttttacggt-ttgttatcgatatgttgtaagagaattggttaaagatttcataaaag 41341932  T
Q  216 aaaatttt 223  Q
    ||||||||    
T  41341931 aaaatttt 41341924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 21430929 - 21430887
Alignment:
Q  32 taaaatatttgtccatttctaatagagtataaaaaatataacc 74  Q
    |||||| ||| |||||||||| |||||||||||||||||||||    
T  21430929 taaaatgtttttccatttctagtagagtataaaaaatataacc 21430887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 41342145 - 41342066
Alignment:
Q  2 tttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaa 82  Q
    ||||||||| ||||||||||||||||| ||||||   ||| ||||  | || |||||||||| |||||||||| |||||||    
T  41342145 tttataattgctttaaaatgttgattt-tttaaatgttttttccaaatatagtagagtataataaatataaccctaattaa 41342066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25878404 - 25878626
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnncaccaccaac 100  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  25878404 atttataattaccctaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaattttttttcaccaccaac 25878503  T
Q  101 ataggtcaattacaacctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggtta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25878504 ataggtcaattacaacctttttcaacaaatataagaataatttatattataatagtagttttatggtcttgccaacgatgtgctctaagataattggtta 25878603  T
Q  201 aagaattcataaaagaaaatttt 223  Q
    |||||||||||||||||||||||    
T  25878604 aagaattcataaaagaaaatttt 25878626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 28007156 - 28007381
Alignment:
Q  1 atttataattactttaaaatgttgatt-tgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnn-caccacca 98  Q
    |||||||||| || ||||||||||||| | |||||||||||||||||||||||  ||||||||||||||||||||||||||||         || |||||    
T  28007156 atttataattgctctaaaatgttgattctttttaaaatatttgtccatttctagcagagtataaaaaatataaccataattaattattttttcatcacca 28007255  T
Q  99 acatag-gtcaattacaacctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattgg 197  Q
    || ||| |||| |||||| ||||||||||||||||||||||| |||||||||||||| |||||||||  ||||||||||||| |||| | ||||||||||    
T  28007256 acgtagtgtcagttacaatctttttcaacaaatataagaatagtttatattataatagtagttttataatcttgccaacgatatgctttgagataattgg 28007355  T
Q  198 ttaaagaattcataaaagaaaatttt 223  Q
    ||||||| ||||||||||||| ||||    
T  28007356 ttaaagatttcataaaagaaattttt 28007381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 30937088 - 30936987
Alignment:
Q  118 tttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaa 217  Q
    ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||||  ||||||||||||    
T  30937088 tttttcaacaaatataagaataatttaaaatataatagtagttttatggtcttgctaacgatatgctctaagagaattggttaaaggtttcataaaagaa 30936989  T
Q  218 aa 219  Q
    ||    
T  30936988 aa 30936987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 9343183 - 9343078
Alignment:
Q  118 tttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaa 217  Q
    ||||||||||||||||| ||||||||| | ||| | | ||||||||| ||||||| |||||| | |||||||| ||||||||||||| ||||||||||||    
T  9343183 tttttcaacaaatataaaaataatttagaatatgagagtagttttatagtcttgctaacgatatactctaagagaattggttaaagatttcataaaagaa 9343084  T
Q  218 aatttt 223  Q
    ||||||    
T  9343083 aatttt 9343078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 10918163 - 10918009
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaa-tatttgtccatttctaatagagtataaaaaatataaccataattaa-annnnnnncaccacca 98  Q
    |||||||||| || |||||||||||||| ||||||| |||||||| |||||||   ||||||||||||||||||| |||||||         ||||||||    
T  10918163 atttataattgctctaaaatgttgatttttttaaaaatatttgtcaatttctagcggagtataaaaaatataaccttaattaattattttttcaccacca 10918064  T
Q  99 acatag-gtcaattacaacctttttcaacaaatataagaataatttatattataa 152  Q
    |||||| ||||   |||| ||||||||||||||||||||||| || |||||||||    
T  10918063 acatagcgtcaggcacaagctttttcaacaaatataagaatagttaatattataa 10918009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 45438599 - 45438519
Alignment:
Q  2 tttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaa 82  Q
    ||||||||||||  ||||| ||||||| || ||||||||| | ||||||||  | |||||||||||||||| |||||||||    
T  45438599 tttataattactcaaaaatattgattttttaaaaatattttttcatttctagcatagtataaaaaatataaacataattaa 45438519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 32992040 - 32991969
Alignment:
Q  3 ttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataacc 74  Q
    |||||||| ||||||||| ||||||| |||||||||||| | |||||||| | |||||  ||||||||||||    
T  32992040 ttataatttctttaaaattttgatttatttaaaatattttttcatttctagtggagtagcaaaaatataacc 32991969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 30937207 - 30937137
Alignment:
Q  2 tttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataa 72  Q
    ||||||||| || ||||||||||||||  |||| |||||| ||||||||||   |||||||||||||||||    
T  30937207 tttataattgctctaaaatgttgattttcttaagatatttttccatttctagcggagtataaaaaatataa 30937137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 10918001 - 10917959
Alignment:
Q  181 tgctctaagataattggttaaagaattcataaaagaaaatttt 223  Q
    |||||| ||||||||||||||||| ||||||||||||| ||||    
T  10918001 tgctctgagataattggttaaagatttcataaaagaaattttt 10917959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 32991925 - 32991873
Alignment:
Q  119 ttttcaacaaatataagaataatttatattataatactagttttatggtcttg 171  Q
    ||||||||||||||||||||| |||| | ||||||| || ||||||| |||||    
T  32991925 ttttcaacaaatataagaatagtttagaatataatagtaattttatgatcttg 32991873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 33372682 - 33372642
Alignment:
Q  105 gtcaattacaacctttttcaacaaatataagaataatttat 145  Q
    |||||| ||||| |||||||||||||||||||||| |||||    
T  33372682 gtcaatcacaacttttttcaacaaatataagaatagtttat 33372642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 22604080 - 22604301
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnncaccaccaac 100  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||| |||||    
T  22604080 atttataattaccctaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaa-tttttttcacccccaac 22604178  T
Q  101 ataggtcaattacaacctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggtta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22604179 ataggtcaattacaacctttttcaacaaatataagaataatttatattataatagtagttttatggtcttgccaacgatgtgctctaagataattggtta 22604278  T
Q  201 aagaattcataaaagaaaatttt 223  Q
    |||||||||||||||||||||||    
T  22604279 aagaattcataaaagaaaatttt 22604301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 11559468 - 11559658
Alignment:
Q  34 aaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnncaccaccaacatagg-tcaattacaacctttttcaacaaatat 132  Q
    ||||||||||||||||||| |||| ||||||||||| ||||||| | |         |||||||||| |||  ||| | |||||||||||||||||||||    
T  11559468 aaatatttgtccatttctagtagactataaaaaatacaaccatattaattattttttcaccaccaacgtagcatcagtcacaacctttttcaacaaatat 11559567  T
Q  133 aagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaaaatttt 223  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  11559568 aagaataatttataccataatagtagttttatggtcttgccaacgatatgctctgagataattggttaaagatttcataaaagaaaatttt 11559658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 11568737 - 11568927
Alignment:
Q  34 aaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnncaccaccaacatagg-tcaattacaacctttttcaacaaatat 132  Q
    ||||||||||||||||||| |||| ||||||||||| ||||||| | |         |||||||||| |||  ||| | |||||||||||||||||||||    
T  11568737 aaatatttgtccatttctagtagactataaaaaatacaaccatattaattattttttcaccaccaacgtagcatcagtcacaacctttttcaacaaatat 11568836  T
Q  133 aagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaaaatttt 223  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||    
T  11568837 aagaataatttataccataatagtagttttatggtcttgccaacgatatgctctgagataattggttaaagatttcataaaagaaaatttt 11568927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 54377987 - 54378197
Alignment:
Q  15 taaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnncaccaccaacatag-gtcaattac 113  Q
    |||||||||||||| || |||||||||||| | |||||   |||||||||||||||||||||||||||         ||||||||| ||| |||||| ||    
T  54377987 taaaatgttgattttttaaaaatatttgtcaagttctagcggagtataaaaaatataaccataattaattatttttgaccaccaacgtagcgtcaatcac 54378086  T
Q  114 aacctttttc-aacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataa 212  Q
    ||| |||||  |||||||||||||||| |||||||||||||| ||||| |||||||||||||||||| |||| | ||||||||||||||||| ||| |||    
T  54378087 aacatttttttaacaaatataagaatagtttatattataatagtagttgtatggtcttgccaacgatatgctttgagataattggttaaagatttcgtaa 54378186  T
Q  213 aagaaaatttt 223  Q
    |||||||||||    
T  54378187 aagaaaatttt 54378197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 50093239 - 50093446
Alignment:
Q  15 taaaatgttgatttgtttaaaa-tatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnncaccaccaacataggtcaattac 113  Q
    |||||||||||||| || |||| ||||||||||||||||| | ||||| ||||||||||| ||||||||        |||||||||| |||     | ||    
T  50093239 taaaatgttgattttttaaaaaatatttgtccatttctaacatagtattaaaaatataactataattaattatttttcaccaccaacgtag-----tcac 50093333  T
Q  114 aacctttttcaacaaatataagaataatttatattataatacta---gttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcat 210  Q
    |||||||||||||||||||||||||| ||||||| |||||| ||   |||||||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  50093334 aacctttttcaacaaatataagaatagtttatataataatagtaatagttttatggtcttgccaacgatatgctctgagataattggttaaagatttcat 50093433  T
Q  211 aaaagaaaatttt 223  Q
    |||||||| ||||    
T  50093434 aaaagaaattttt 50093446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 33757098 - 33757207
Alignment:
Q  114 aacctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaa 213  Q
    ||||||||| ||||||||||| |||| |||| | ||||||| |||||||||| |||||| ||| || | |||||||| |||||||||| |||||||||||    
T  33757098 aaccttttttaacaaatataaaaatagtttagaatataatagtagttttatgatcttgctaacaatatactctaagagaattggttaatgaattcataaa 33757197  T
Q  214 agaaaatttt 223  Q
    ||||||||||    
T  33757198 agaaaatttt 33757207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 25746146 - 25746042
Alignment:
Q  117 ctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaaga 216  Q
    ||||||||||||||||||||||| |||| | ||||||| ||||||||||||||||| ||| ||   |||||||| ||||| ||||||| ||||||||||     
T  25746146 ctttttcaacaaatataagaatagtttaaaatataatagtagttttatggtcttgctaacaataatctctaagagaattgattaaagatttcataaaagg 25746047  T
Q  217 aaatt 221  Q
    |||||    
T  25746046 aaatt 25746042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 223
Target Start/End: Original strand, 54783600 - 54783704
Alignment:
Q  118 tttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaa 217  Q
    ||||||||||||||||| |||| || | || |||||| ||||||||||||||||| |||||  || ||||||| ||||||||||| | ||||||||||||    
T  54783600 tttttcaacaaatataaaaatagttaaaat-ataatagtagttttatggtcttgctaacgacatgttctaagagaattggttaaatatttcataaaagaa 54783698  T
Q  218 aatttt 223  Q
    ||||||    
T  54783699 aatttt 54783704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 8414242 - 8414322
Alignment:
Q  133 aagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaa 214  Q
    ||||||| |||| | ||||||| |||||| ||||| |||| |||||| |||||||||| ||||||||||| | |||||||||    
T  8414242 aagaatagtttagaatataataatagttt-atggtattgctaacgatatgctctaagagaattggttaaatatttcataaaa 8414322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 54783486 - 54783566
Alignment:
Q  2 tttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaa 82  Q
    ||||||||| || |||||||||||||| ||  |||||||| |||||||||    |||||||||| ||| ||||||||||||    
T  54783486 tttataattgctctaaaatgttgattttttataaatatttttccatttcttgccgagtataaaacatacaaccataattaa 54783566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4975028 - 4975250
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnncaccaccaac 100  Q
    |||||||||||   |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||        ||||||||||    
T  4975028 atttataattatcctaaaatgttgatttgtttaaaatatttgtccatttctaatagggtataaaaaatataaccataattaattttttttcaccaccaac 4975127  T
Q  101 ataggtcaattacaacctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggtta 200  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4975128 ataggtcaattacaacttttttcaacaaatataagaataatttatattataatagtagttttatggtcttgccaacgatgtgctctaagataattggtta 4975227  T
Q  201 aagaattcataaaagaaaatttt 223  Q
    |||||||||||||||||||||||    
T  4975228 aagaattcataaaagaaaatttt 4975250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15075768 - 15075546
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnncaccaccaac 100  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        ||||||||||    
T  15075768 atttataattaccctaaaatgttgatttgtttaaaatatttgtccatttctaacagagtataaaaaatataaccataattaa-tttttttcaccaccaac 15075670  T
Q  101 atag-gtcaattacaacctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggtt 199  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15075669 gtagtgtcaattacaacctttttcaacaaatataagaataatttatattataatagtagttttatggtcttgccaacgatgtgctctaagataattggtt 15075570  T
Q  200 aaagaattcataaaagaaaatttt 223  Q
    ||||||||||||||||||||||||    
T  15075569 aaagaattcataaaagaaaatttt 15075546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2751958 - 2751741
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnncaccaccaac 100  Q
    ||||||| ||||  |||||||||||| |||||||||||||||||||||| ||| | ||||||||||||||||||||||||          ||||||||||    
T  2751958 atttatatttaccctaaaatgttgatatgtttaaaatatttgtccatttttaacatagtataaaaaatataaccataatt------ttttcaccaccaac 2751865  T
Q  101 atag-gtcaattacaacctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggtt 199  Q
     ||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  2751864 gtagcgtcagtcacaacctttttcaacaaatataagaataatttatattataataatagttttatggtcttgccaacgatatgctctaagataattggtt 2751765  T
Q  200 aaagaattcataaaagaaaatttt 223  Q
    ||||||||||||||||||||||||    
T  2751764 aaagaattcataaaagaaaatttt 2751741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 9293455 - 9293642
Alignment:
Q  34 aaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnncaccaccaacatag-gtcaattacaacctttttcaacaaatat 132  Q
    |||||||| ||| ||||||  ||||||||||||||||||||||||||||        |||||||||| ||| || | | |||||||||||||| ||| ||    
T  9293455 aaatatttatccgtttctagcagagtataaaaaatataaccataattaattatttttcaccaccaacgtagcgttagtcacaacctttttcaaaaaa-at 9293553  T
Q  133 aagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaaaatttt 223  Q
    ||||||  |||||||||||||| |||||||||||||||||||||||| ||  |||||||||||||||| ||| ||||||||||||||||||    
T  9293554 aagaatggtttatattataatagtagttttatggtcttgccaacgatatg--ctaagataattggttacagatttcataaaagaaaatttt 9293642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 20990559 - 20990728
Alignment:
Q  56 gagtataaaaaatataaccataattaaannnnnnn-caccaccaacatagg-tcaattacaacctttttcaacaaatataagaataatttatattataat 153  Q
    |||||||||||||||||||||||||||         |||||||||| |||  ||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  20990559 gagtataaaaaatataaccataattaattattttttcaccaccaacgtagcatcaatcacaacctttttcaacaaatataataatattttatattataat 20990658  T
Q  154 actagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaaaatttt 223  Q
    | ||||| ||||||||||||||| || |||| | ||||| ||||||||||| ||||||||||||||||||    
T  20990659 agtagttgtatggtcttgccaacaatatgctatgagatagttggttaaagatttcataaaagaaaatttt 20990728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 213
Target Start/End: Complemental strand, 13322793 - 13322584
Alignment:
Q  2 tttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaa--annnnnnncaccaccaa 99  Q
    ||||||||| || |||||||||||||| || || |||||| || |||||||  ||||||||||||||||||||||||||||  |        ||||||||    
T  13322793 tttataattgctctaaaatgttgattttttaaagatatttttc-atttctagcagagtataaaaaatataaccataattaattattttttcaaccaccaa 13322695  T
Q  100 cataggtcaattacaa--cctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattgg 197  Q
    |    |||||| ||||  ||||||||||||||||||||||||||||| |  |||||| ||||||||| ||||||| |||||| |||||||||| ||||||    
T  13322694 c----gtcaatgacaaagcctttttcaacaaatataagaataatttagaa-ataataatagttttatagtcttgctaacgatatgctctaagagaattgg 13322600  T
Q  198 ttaaagaattcataaa 213  Q
    ||||||| || |||||    
T  13322599 ttaaagattttataaa 13322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 25380882 - 25380811
Alignment:
Q  146 attataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaa 217  Q
    ||||||||| |||||| |||||||||| |||||| | |||||||||||||||||||||| ||||||||||||    
T  25380882 attataatagtagtttgatggtcttgctaacgatatactctaagataattggttaaagatttcataaaagaa 25380811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 25689360 - 25689291
Alignment:
Q  149 ataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaaaa 219  Q
    |||||| |||||||||| |||||| |||||| |||||||||||||||||||||||| ||||||||||||||    
T  25689360 ataatagtagttttatg-tcttgctaacgatatgctctaagataattggttaaagatttcataaaagaaaa 25689291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 38758947 - 38758847
Alignment:
Q  119 ttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggtt-aaagaattcataaaagaa 217  Q
    ||||||||||||||||||||||| || | ||||||| ||||||||||||||| | |||||| || ||||||| | |||||| ||||| ||| ||||||||    
T  38758947 ttttcaacaaatataagaataatctagaatataatagtagttttatggtcttactaacgatatgatctaagagatttggttaaaagatttcctaaaagaa 38758848  T
Q  218 a 218  Q
    |    
T  38758847 a 38758847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 3687264 - 3687342
Alignment:
Q  118 tttttcaacaaatataagaataatttatattataatactagttttatggtc-ttgccaacgatgtgctctaagataatt 195  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||||  || |||| ||| || |||||||||||||||    
T  3687264 tttttcaacaaatataagaataatttagaatataatagtagttttataatctttgctaactatatgctctaagataatt 3687342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 25381026 - 25380976
Alignment:
Q  33 aaaatatttgtccatttctaatagagtataaa-aaatataaccataattaa 82  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||||||||    
T  25381026 aaaatatttgtccatttctagcagagtataaagaaatataaccataattaa 25380976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 25690494 - 25690412
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataa-aaaatataaccataattaa 82  Q
    |||||||||| |  |||||||||||| | ||| |||||||||| ||||||||   |||||||| |||||||||||||||||||    
T  25690494 atttataattgccataaaatgttgatattttttaaatatttgtgcatttctagccgagtataaaaaaatataaccataattaa 25690412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 25690380 - 25690338
Alignment:
Q  112 acaacctttttcaacaaatataagaataatttatattataata 154  Q
    ||||||||||||||||||||||| |||| |||| |||||||||    
T  25690380 acaacctttttcaacaaatataataatagtttagattataata 25690338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 22434102 - 22433879
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnnc-accaccaa 99  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||          ||||||||    
T  22434102 atttataattaccctaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatgtaaccataattaattatttttttaccaccaa 22434003  T
Q  100 cataggtcaattacaacctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggtt 199  Q
    | |||   | | ||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||| ||||| |||||||||||||    
T  22434002 cgtagcgtagtcacaacctttttcaacaaatataacaataatttatattataatggtagttttatggtcttgccaacgatatgctcgaagataattggtt 22433903  T
Q  200 aaagaattcataaaagaaaatttt 223  Q
    ||||| ||||||||||||||||||    
T  22433902 aaagatttcataaaagaaaatttt 22433879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 19898425 - 19898206
Alignment:
Q  2 tttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaa--annnnnnncaccaccaa 99  Q
    ||||||||| ||||||||||||||||| || ||||||||| ||||||| ||||||||| |||||| ||||||| |||||||  |        ||||||      
T  19898425 tttataattgctttaaaatgttgattttttaaaaatatttttccatttttaatagagtgtaaaaa-tataaccttaattaattattttttcaaccaccgg 19898327  T
Q  100 cataggtcaattaca-acctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggt 198  Q
    |    |||||| ||| | | ||||||||||||||| ||||| |||| |  |||||| ||||||||||||||||| |||||| |||||||| | |||||||    
T  19898326 c----gtcaatcacatagccttttcaacaaatataggaatagtttagagcataatagtagttttatggtcttgctaacgatatgctctaataaaattggt 19898231  T
Q  199 taaagaattcataaaagaaaatttt 223  Q
    |||||| ||||||||||||||||||    
T  19898230 taaagatttcataaaagaaaatttt 19898206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 9592025 - 9591803
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaa--annnnnnncaccacca 98  Q
    |||||||||| || ||||||||||| || |||||||||||| ||||||||||  |||||| |||||||||||||||||||||  |        |||||||    
T  9592025 atttataattgctataaaatgttgagttttttaaaatatttttccatttctagcagagta-aaaaaatataaccataattaattattttttcaaccacca 9591927  T
Q  99 acataggtcaattac--aacctttttcaacaaatat-aagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataatt 195  Q
    |||    ||||| ||  ||| |||||||| |||||| || |||| |||| | ||||||| |||||||||| |||||| ||| || | |||||||| ||||    
T  9591926 aca----tcaatcacataacatttttcaataaatataaaaaatagtttagaatataatagtagttttatgatcttgctaacaatattctctaagagaatt 9591831  T
Q  196 ggttaaagaattcataaaagaaaatttt 223  Q
    |||||||||  |||||||||||||||||    
T  9591830 ggttaaagatatcataaaagaaaatttt 9591803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 56490798 - 56490906
Alignment:
Q  117 ctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaac--gatgtgctctaagataattggttaaagaattcataaaa 214  Q
    ||||||||||||||||||||||||| |||| |||||||  | | ||||| |||| | |||  ||  |||| ||||| ||||| ||||||| |||||||||    
T  56490798 ctttttcaacaaatataagaataatatataatataatagaaatgttatgatcttcctaactagagatgctataagagaattgattaaagatttcataaaa 56490897  T
Q  215 gaaaatttt 223  Q
    |||||||||    
T  56490898 gaaaatttt 56490906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 37 - 223
Target Start/End: Complemental strand, 8544076 - 8543888
Alignment:
Q  37 tatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnn-caccaccaacatag-gtcaattacaacctttttcaacaaatataa 134  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||         ||||| |||| ||| |||| | |||||||||||||||||||||||    
T  8544076 tatttgtccatttctagcagagtataaaaaatataaccataatcaattattttttcaccatcaacgtagcgtcagtcacaacctttttcaacaaatataa 8543977  T
Q  135 gaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaaaatttt 223  Q
    ||||| |||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||| ||||||| ||||||||||||||||||    
T  8543976 gaatagtttatattataatagtagttgtatggtcttgccaacgatatgctctgagataattgattaaagatttcataaaagaaaatttt 8543888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 23428721 - 23428920
Alignment:
Q  2 tttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnncaccaccaaca 101  Q
    ||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||||||||||||||| ||| | ||         | |||||||    
T  23428721 tttataattgctttaaaatgttgatttctt-aaaatatttttccatttctagtagagtataaaaaatataaccttaagt-aattattttttcaaccaaca 23428818  T
Q  102 taggtcaat--tacaacctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggtt 199  Q
     | ||||||  |  | ||||||||||||||||| |||||| |||| |  | |||| ||||||||||||||||| |||||| || ||||||||||||||||    
T  23428819 -acgtcaatcattgagcctttttcaacaaatattagaatagtttagaacaaaatagtagttttatggtcttgctaacgatatgttctaagataattggtt 23428917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 42594246 - 42594341
Alignment:
Q  118 tttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaa 214  Q
    ||||| ||||||||| ||||||||||| | ||||||| ||||||||||| ||| | || ||| |||||||||| ||||||||| || ||||||||||    
T  42594246 ttttttaacaaatatgagaataatttaaaatataatagtagttttatggccttactaatgatatgctctaagagaattggttatag-attcataaaa 42594341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 33 - 223
Target Start/End: Original strand, 53720 - 53912
Alignment:
Q  33 aaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnn-caccaccaacatag-gtcaattacaacctttttcaacaaat 130  Q
    ||||||||||||||||||||  | |||||||||||||||| |||||||||         |||||||||| ||| |||| | |||||||||||||||||||    
T  53720 aaaatatttgtccatttctagcaaagtataaaaaatataatcataattaattattttttcaccaccaacgtagcgtcagtcacaacctttttcaacaaat 53819  T
Q  131 ataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaaaatttt 223  Q
    || |||||||||||| ||||||||  |||| ||||||||||||||| || |||||| ||||||||||||||||| ||||||||||||||||||    
T  53820 attagaataatttatgttataatagaagttgtatggtcttgccaacaatatgctctgagataattggttaaagatttcataaaagaaaatttt 53912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 41249962 - 41249771
Alignment:
Q  33 aaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnn-caccaccaacatag-gtcaattacaacctttttcaacaaat 130  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||||||         |||||| ||||||| |||| | ||||| |||||||||||||    
T  41249962 aaaatatttatccatttctagcagagtataaaaaatataaccataattaattattttttcaccactaacatagcgtcagtcacaac-tttttcaacaaat 41249864  T
Q  131 ataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaaaatttt 223  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||||| || |||||| | ||||||||||||||| ||| ||||||||||||||    
T  41249863 ataagaatagtttatattataatagtagttgtatggtcttgccaacaatatgctctgatataattggttaaagatttcttaaaagaaaatttt 41249771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 33 - 217
Target Start/End: Original strand, 29069095 - 29069281
Alignment:
Q  33 aaaatatttgtccatttctaatagagtataaaaaatataaccataattaaannnnnnn-caccaccaacatag-gtcaattacaacctttttcaacaaat 130  Q
    ||||||||||||||||||||  |  |||||||||||||||| ||||||||         |||||||||| ||  |||| | |||||||||||||||||||    
T  29069095 aaaatatttgtccatttctagcatggtataaaaaatataactataattaattattttttcaccaccaacgtaacgtcagtcacaacctttttcaacaaat 29069194  T
Q  131 ataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaa 217  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||||| |||| | ||||||||||||||||| ||||||||||||    
T  29069195 ataagaatagtttatataataatagtagttttatggtcttgccaacgatatgctatgagataattggttaaagatttcataaaagaa 29069281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 26708584 - 26708520
Alignment:
Q  127 aaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagat 191  Q
    |||||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  26708584 aaatataaaaatagtttatattataatagtagttttatggtcttgccaacgatatgctctaagat 26708520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 26978318 - 26978254
Alignment:
Q  127 aaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagat 191  Q
    |||||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  26978318 aaatataaaaatagtttatattataatagtagttttatggtcttgccaacgatatgctctaagat 26978254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 26708863 - 26708781
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaa-tatttgtccatttctaatagagtataaaaaatataaccataattaa 82  Q
    |||||||||| |  |||||||||||||| ||||||| ||||| ||||||||||  |||| ||||||||||||| |||||||||    
T  26708863 atttataattgccctaaaatgttgatttttttaaaaatatttatccatttctagcagagaataaaaaatataatcataattaa 26708781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 26978597 - 26978515
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaa-tatttgtccatttctaatagagtataaaaaatataaccataattaa 82  Q
    |||||||||| |  |||||||||||||| ||||||| ||||| ||||||||||  |||| ||||||||||||| |||||||||    
T  26978597 atttataattgccctaaaatgttgatttttttaaaaatatttatccatttctagcagagaataaaaaatataatcataattaa 26978515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 37192989 - 37193031
Alignment:
Q  33 aaaatatttgtccatttctaatagagtataaaaaatataacca 75  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  37192989 aaaatatttgtccatttctagcagagtataaaaaatataacca 37193031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 7031272 - 7031352
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtataaaaaatataaccataattaa 82  Q
    |||| ||||| || |||| ||||||||| || |||| |||| | |||||||| ||||||||||||||||||||| |||||||    
T  7031272 atttgtaattgctctaaactgttgatttctt-aaaacattttttcatttctagtagagtataaaaaatataaccttaattaa 7031352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 37193029 - 37193075
Alignment:
Q  172 ccaacgatgtgctctaagataattggttaaagaattcataaaagaaa 218  Q
    |||||||| |||| | ||||||||||||||||| |||||||||||||    
T  37193029 ccaacgatatgctatgagataattggttaaagatttcataaaagaaa 37193075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 7031386 - 7031442
Alignment:
Q  116 cctttttcaacaaatataagaataatttatattataatactagttttatggtcttgc 172  Q
    ||||||||||||||||| |||||| |||| |  | |||| |||||||||||||||||    
T  7031386 cctttttcaacaaatattagaatagtttagaacaaaatagtagttttatggtcttgc 7031442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 292171 - 292278
Alignment:
Q  116 cctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaag 215  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||| ||||| ||||||| |||||||||     
T  292171 cctttttcaacaaatataagaataatttataatataatagtagttttatggtcttgctaacgatatgctctaagagaattgtttaaagatttcataaaat 292270  T
Q  216 aaaatttt 223  Q
    ||| ||||    
T  292271 aaactttt 292278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 11083017 - 11083124
Alignment:
Q  116 cctttttcaacaaatataagaataatttatattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaag 215  Q
    ||||||||||||||||||||||||||||| | ||||||| |||||||||||||||   |||||   ||||||||| || |||||||||| ||||||||||    
T  11083017 cctttttcaacaaatataagaataatttagaatataatagtagttttatggtcttattaacgacacgctctaagaaaactggttaaagatttcataaaag 11083116  T
Q  216 aaaatttt 223  Q
    ||| ||||    
T  11083117 aaattttt 11083124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 219
Target Start/End: Complemental strand, 17371831 - 17371727
Alignment:
Q  116 cctttttcaacaaatataagaataattt-atattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaa 214  Q
    ||||||| |||||||||||||| ||||| | | ||||||| | ||||||||||||||| |||||| |||||||||| ||||||||||||| | |||||||    
T  17371831 ccttttttaacaaatataagaacaattttagaatataatagttgttttatggtcttgctaacgatatgctctaagagaattggttaaagattgcataaaa 17371732  T
Q  215 gaaaa 219  Q
    |||||    
T  17371731 gaaaa 17371727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 11082901 - 11082983
Alignment:
Q  1 atttataattactttaaaatgttgatttgtttaaaatatttgtccatttctaatagagtat-aaaaaatataaccataattaa 82  Q
    |||||||||| || |||||| ||||||| ||||| |||||| || |||||||| ||||||| ||||||||||||| |||||||    
T  11082901 atttataattgctctaaaatcttgatttttttaagatatttttctatttctaacagagtataaaaaaatataaccctaattaa 11082983  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 292063 - 292143
Alignment:
Q  2 tttataattactttaaaatgttgatttgtttaaa-atatttgtccatttctaatagagtataaaaaatataaccataattaa 82  Q
    ||||||||| || ||||||||| |||| || ||| |||||| ||  ||||||  ||||||||||||||||||||||||||||    
T  292063 tttataattgctctaaaatgtt-attttttaaaagatatttttctgtttctagcagagtataaaaaatataaccataattaa 292143  T

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Target: scaffold0070 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 39895 - 39969
Alignment:
Q  145 tattataatactagttttatggtcttgccaacgatgtgctctaagataattggttaaagaattcataaaagaaaa 219  Q
    |||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| |||||||    
T  39895 tattataatagtagttttatggtcttgctaacgatatgctctaagataattggttaaagatttcatataagaaaa 39969  T

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