View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_high_2 (Length: 555)
Name: NF9595A_high_2
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_high_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 20 - 555
Target Start/End: Original strand, 7088525 - 7089060
Alignment:
| Q |
20 |
atcgataatccatggtgaatatgtccttcccaatttttccaaattgtagtataactttttcttgttctgcagccgaaacgttttggctaggttctgcagc |
119 |
Q |
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| T |
7088525 |
atcgatagtccatggtgaatatgtccttcccaatttttccaaattgtagtataactttttcttgttctgcagccgaaacgttttggctaggttctgcagc |
7088624 |
T |
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| Q |
120 |
tgctacaagctgaaaattcttcactgaagccaccgtaacccgtcccttgaaattcaaacaccaacattgaagttgttcatgccatcttggtgctttgttt |
219 |
Q |
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| T |
7088625 |
tgctacaagctgaaaattcttcaccgaagccaccgtaacccgtcccttgaaattcaaacaccaacattgcagttgttcatgccatcttggtgctttgttt |
7088724 |
T |
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| Q |
220 |
ttcaaaatcagtggctctcttgcaaaatcagtgcaagttgcgccaaattcaacaacttctggcttcttttcttttgcagattcatgctcattgtggcaat |
319 |
Q |
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||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7088725 |
ttcaaaatcagtggctctcttgcaaaatcagtgtaagttgagccaaattcaacaacttctggcttcttttcttttgcagattcatgctcattgtggcaat |
7088824 |
T |
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| Q |
320 |
tggtaaattccataggagtaggagcagttcctccttcttggactgaagatatggggattaagtgcattgtactccgcattcgccttggccctctcgtacg |
419 |
Q |
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| T |
7088825 |
tggtaaattccataggagtaggagcagttcctccttcttggactgaagatatggggattaagtgcattgtactccgcattcgccttggacctctcgtacg |
7088924 |
T |
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| Q |
420 |
aagaacattgagttcataagatacagttgctactttatagttagcaggagcaggagcagcccttggaagtacttgcttcatatgaaccttttgttgcaac |
519 |
Q |
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| T |
7088925 |
aagaacattgagttcataagatacagttgctactttatagttagcaggagcaggagcagcccttggaagtacttgcttcatatgaaccttttgttgcaac |
7089024 |
T |
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| Q |
520 |
ttgcaactcgatggaagcaaagacacatgtggagga |
555 |
Q |
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| T |
7089025 |
ttgcaactcgatggaagcgaagacacatgtggagga |
7089060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 448 - 555
Target Start/End: Original strand, 7668293 - 7668402
Alignment:
| Q |
448 |
gctactttatagttagcaggagcaggagcagcccttggaagtacttgcttcatat--gaaccttttgttgcaacttgcaactcgatggaagcaaagacac |
545 |
Q |
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|||||||||||| |||||| |||||||||| |||| |||| |||||||||||||| | ||||||||||||||||||||||||||||||||| |||| || |
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| T |
7668293 |
gctactttatagctagcagtagcaggagcaaccctaggaaatacttgcttcatatatggaccttttgttgcaacttgcaactcgatggaagcgaagaaac |
7668392 |
T |
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| Q |
546 |
atgtggagga |
555 |
Q |
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|||||||||| |
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| T |
7668393 |
atgtggagga |
7668402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 221
Target Start/End: Original strand, 39942985 - 39943079
Alignment:
| Q |
127 |
agctgaaaattcttcactgaagccaccgtaacccgtcccttgaaattcaaacaccaacattgaagttgttcatgccatcttggtgctttgttttt |
221 |
Q |
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| T |
39942985 |
agctggaaatttttaactgaagcgactgtcacacgtccattgaagttcaaacaccagcattggagttgttcatgccacctaggagccttgttttt |
39943079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 7878125 - 7878207
Alignment:
| Q |
124 |
acaagctgaaaattcttcactgaagccaccgtaacccgtcccttgaaattcaaacaccaacattgaagttgttcatgccatct |
206 |
Q |
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| T |
7878125 |
acaagttgaaagttcttaactgaagccactgtaacgcggcccttgaaatttaggcaccagcattgcagctgttcatgccatct |
7878207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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