View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_high_27 (Length: 290)
Name: NF9595A_high_27
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 99 - 284
Target Start/End: Complemental strand, 18787085 - 18786899
Alignment:
| Q |
99 |
gtttaatagcatacaatacaatatcttcttgtttgttgttctcaacacactcgtggcaaagacttatgatccctccaatgccgtcgctgcta-aaaatat |
197 |
Q |
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| T |
18787085 |
gtttaatagcatacaatacaatatcttcatgtttgttgttctcaacacactcgtggcaaagacttatgatccctccaatgccgtcgctgctaaaaaatat |
18786986 |
T |
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| Q |
198 |
gagaaaacatatgacaaaacacgaaaaaactaaacgcttccttaattcttacacaatatatatgcagaagctgtacatattattcga |
284 |
Q |
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| T |
18786985 |
gagaaaacatatgacaaaacacgaaaaaactaaacacttccttatttctaacacaatatatattcagaagctgtacatattgttcga |
18786899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 18787179 - 18787149
Alignment:
| Q |
7 |
aacaggatgctcgtatttgacacagctgcag |
37 |
Q |
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| T |
18787179 |
aacaggatgctcgtatttgacacagctgcag |
18787149 |
T |
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