View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_high_39 (Length: 236)
Name: NF9595A_high_39
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 10707896 - 10707705
Alignment:
| Q |
20 |
aatatgacaagacaaaaatactcttaagtattttatatagtttcaatttcagagttccactaaataaaaagaactactagccagtagtttcaaatttcaa |
119 |
Q |
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| T |
10707896 |
aatatgacaagacaaaaatactcttaagtattt-atatagtttcaatttcagagttccactaaataaaaagaactactagccagtagtttcaaattccaa |
10707798 |
T |
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| Q |
120 |
tttcatggctgatcgtgtggtaagaccaaggtacaatattactcaaagtcatgaagtgaccataaatgttgtaagtgttgttagtgtttacaa |
212 |
Q |
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| T |
10707797 |
tttcatggctgatcgtgtggtaagaccaaggtacaatattactcaaagtcatgaagtgaccataaatgttgtaagtgttgttaatgtttacaa |
10707705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 10694201 - 10694105
Alignment:
| Q |
29 |
agacaaaaatactcttaagtattttatatagtttcaatttcagagttccactaaataaaaagaactactagccagtagtttcaaatttcaatttcat |
125 |
Q |
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| T |
10694201 |
agacaaaaatactcttaagtattttatatagtttcaatttcatagctccactaaataaaaagaaccactagctagtagtttcaaatttcaatttcat |
10694105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 10694037 - 10693950
Alignment:
| Q |
114 |
tttcaatttcatggctgatcgtgtggtaagaccaa---ggtacaatattactcaaagtcatgaagtgaccataaatgttgtaagtgtt |
198 |
Q |
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| T |
10694037 |
tttcaatttcatggctgatcatgttgtaagaccaacaagatccaattttaatcgaagtcatgaagtgaccataaatgttgtgagtgtt |
10693950 |
T |
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