View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_high_7 (Length: 415)
Name: NF9595A_high_7
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_high_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 39 - 415
Target Start/End: Complemental strand, 32254059 - 32253664
Alignment:
| Q |
39 |
gacatcaatagcagtagtccctccagtccataccaacttaaatttatgatcagatgctttgaacatcaaatcattgttcaagacttgaaagttactcaga |
138 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32254059 |
gacatcaatagcagtagtccctccagtccatacctacttaaatttatgatcagatgctttgaacatcaaatcattgttcaagacttgaaagttactcaga |
32253960 |
T |
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| Q |
139 |
gtgtaagagttgttctcttctagtagtttgtcataggttgccttgtaagcagttggaatgataacatgtatatcattcccctaaaaataacaaaaaatat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253959 |
gtgtaagagttgttctcttctagtagtttgtcataggttgccttgtaagcagttggaatgataacatgtatatcattcccctaaaaataacaaaaaatat |
32253860 |
T |
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| Q |
239 |
aagtgaaaatatgtcttcaaacaaacgttacagcaatatttccagttaatccttttacctttttgccaacaattatcaattccagatgctcctttccatc |
338 |
Q |
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||||||||||||||||||||||||| |||||| |||||||| ||||||| || ||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
32253859 |
aagtgaaaatatgtcttcaaacaaatgttacaccaatatttacagttaacccccttacctttttgtcaacaattaccaattccagatgctcctttccatc |
32253760 |
T |
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| Q |
339 |
ttttacaacagtccatt-------------------tagttttcagaagtctttcttatcggtaatgtcaccaataaattcaaatggtctctccat |
415 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253759 |
ttttacaacagtccatttgtctttaactttcacaggtagtttccagaagtctttcttatcggtaatgtcaccaataaattcaaatggtctctccat |
32253664 |
T |
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