View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_104 (Length: 304)
Name: NF9595A_low_104
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_104 |
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| [»] scaffold0062 (2 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 4551 - 4721
Alignment:
| Q |
1 |
tcaaatggagataatttgctactgaagaaagattttcgtgtgtaataatatgctaataatttttatagaaaatttcctaacttctcttggtaaatttgga |
100 |
Q |
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| T |
4551 |
tcaaatggagataatttgctactgaagaaagattttcgtgtgtaataatatgctaacaatttt-atagaaaatttcctaacttctcttggtaaatttgga |
4649 |
T |
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| Q |
101 |
tttgcttagaaaatatggtagctgtacatgttttgcctttacttaaaaaatgatgattcaaattttaaactctcctaa |
178 |
Q |
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| T |
4650 |
tttgcttagaaaatatggtagc------tgttttgactttacttaaaaaatgatgattcaaattttaaactctcctaa |
4721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 174 - 304
Target Start/End: Complemental strand, 4856 - 4725
Alignment:
| Q |
174 |
cctaaacacatgacaagaaccagatagatttcaccc-gtaaaaaagttaatgttagagagagtatgagtattcctaacatttctgatgttattttgttat |
272 |
Q |
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| T |
4856 |
cctaaacacatgacaagaaccagatagatttcaccccgtaaaaaagttaatgttagagagagtatgattattcctaacatttctcatgttattttgttat |
4757 |
T |
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| Q |
273 |
gatcatggattagacttatgttcacactatag |
304 |
Q |
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| T |
4756 |
gatcatggattagacttatgttcacactatag |
4725 |
T |
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