View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_106 (Length: 302)
Name: NF9595A_low_106
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_106 |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 144 - 232
Target Start/End: Complemental strand, 7089126 - 7089038
Alignment:
| Q |
144 |
acttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtctttgcttc |
232 |
Q |
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| T |
7089126 |
acttgatcattaagcaatgaacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtcttcgcttc |
7089038 |
T |
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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 7668467 - 7668380
Alignment:
| Q |
146 |
ttgatcattaagcaatg-aacaggtctaattttctcggcaccaagttcacaatcttagatggtcatcctccacatgtgtctttgcttc |
232 |
Q |
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| T |
7668467 |
ttgatcattaagcaaaataacaggtctaattttctcggcaccaagttcacgatcttggatggtcatcctccacatgtttcttcgcttc |
7668380 |
T |
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