View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_109 (Length: 298)
Name: NF9595A_low_109
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_109 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 2 - 286
Target Start/End: Complemental strand, 44028581 - 44028297
Alignment:
| Q |
2 |
catcaagaactacaatttctatcttgattgggtgtgatagacttgtagggactacttggtcattgcttcggtcaacaagaatcacactgattgagtttcc |
101 |
Q |
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| T |
44028581 |
catcaagaactacaatttctatcttgattgggtgtgatagacttgtagggactacttggtcattgcttcggtcaacaagaatcacactgattgagtttcc |
44028482 |
T |
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| Q |
102 |
atccatgtctagtattttgctaccggtgaatattggaagtgaaagtttatttttgaacatgaattgcaaacttaatggttcttccattccttcaagtctc |
201 |
Q |
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| T |
44028481 |
atccatgtctagtattttgctaccggtgaatattggaagtgaaagtttatttttgaacatgaattgcaaacttaatggttcttccattccttcaagtctc |
44028382 |
T |
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| Q |
202 |
aatgaaggtgactttgttattgatcgtactggtggataacattgtctcattgctcgttccacctcttcattcacctgatcatatt |
286 |
Q |
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| T |
44028381 |
aatgaaggtgactttgttattgatcgtactggtggataacattgtctcattgctcgttcaacctcttcattcacctgatcatatt |
44028297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 286
Target Start/End: Original strand, 44017779 - 44018063
Alignment:
| Q |
2 |
catcaagaactacaatttctatcttgattgggtgtgatagacttgtagggactacttggtcattgcttcggtcaacaagaatcacactgattgagtttcc |
101 |
Q |
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||||||| |||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
44017779 |
catcaaggactacaatttctatcttgattgggtgaggtagacttgtagggactatttggtcattgcttttatcaacaagaatcacattgattgagtttcc |
44017878 |
T |
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| Q |
102 |
atccatgtctagtattttgctaccggtgaatattggaagtgaaagtttatttttgaacatgaattgcaaacttaatggttcttccattccttcaagtctc |
201 |
Q |
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||||||||| |||||| | ||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |
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| T |
44017879 |
atccatgtcaagtattctactacctgtgaatattggaagtgaaagcttctttttgaacatgaattgaaaacttaatggttcttccattgctttaagtctc |
44017978 |
T |
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| Q |
202 |
aatgaaggtgactttgttattgatcgtactggtggataacattgtctcattgctcgttccacctcttcattcacctgatcatatt |
286 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| |||||||| |
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| T |
44017979 |
aatgaaggcgaatttgttattgatcgtactggtggataacattgtctcattgctctttccacctcctcgttcacctaatcatatt |
44018063 |
T |
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