View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_11 (Length: 526)
Name: NF9595A_low_11
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_11 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 23 - 526
Target Start/End: Complemental strand, 44683384 - 44682881
Alignment:
| Q |
23 |
gtgataactcgtttgaaatacatgaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctc |
122 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44683384 |
gtgataactcgtttgaaatacatgagtgcgatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctc |
44683285 |
T |
|
| Q |
123 |
ccatcttcctttggtatgctctcnnnnnnnggggtttaataggacttgaaaatgaggtgcatgaatgtataatgaaagcacattatttactaaatctact |
222 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44683284 |
ccatcttcctttggtatgctctcaaaaaaaggggtttaataggacttgaaaatgaggtgcatgaatgtataatgaaagcacattatttactaaatctact |
44683185 |
T |
|
| Q |
223 |
acgtgatgctggaattggtgctatgttaaacgagttcagcaacatagttgtatttgagaggcccctcgatgatgacttcaatcgtagctggaatttggca |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44683184 |
acgtgatgctggaattggtgctatgttaaacgagttcagcaacatagttgtatttgagaggcccctcgatgatgacttcaatcgtagctggaatttggca |
44683085 |
T |
|
| Q |
323 |
tgcagtgggaatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatttattgaaaaacgatccatttggt |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44683084 |
tgcagtgggaatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatttattgaaaaacgatccatttggt |
44682985 |
T |
|
| Q |
423 |
caaaagatgaacaatttaagcctctatgcattgcaaatgatgttggttccaaaaattgtgcttgtttgatgcacacaacttatcacattagctaaaattt |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44682984 |
caaaagatgaacaatttaagcctctatgcattgcaaatgatgttggttccaaaaattgtgcttgtttgatgcacacaacttatcacattagctaaaattt |
44682885 |
T |
|
| Q |
523 |
atgt |
526 |
Q |
| |
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|||| |
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| T |
44682884 |
atgt |
44682881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 24 - 488
Target Start/End: Complemental strand, 44660238 - 44659774
Alignment:
| Q |
24 |
tgataactcgtttgaaatacatgaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcc |
123 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44660238 |
tgataactcgtttgaaatacatgaatgcactatctagagatgttgacatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcc |
44660139 |
T |
|
| Q |
124 |
catcttcctttggtatgctctcnnnnnnnggggtttaataggacttgaaaatgaggtgcatgaatgtataatgaaagcacattatttactaaatctacta |
223 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44660138 |
catcttcctttggtatgctctcaaaaaaaggggtttaataggacttgaaaatgaggtgcatgaatgtataatgaaagcacattatttactaaatctacta |
44660039 |
T |
|
| Q |
224 |
cgtgatgctggaattggtgctatgttaaacgagttcagcaacatagttgtatttgagaggcccctcgatgatgacttcaatcgtagctggaatttggcat |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || |||||||||||||| |||||||| ||||| |||||| |||| | |||||| |||||||||||| |
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| T |
44660038 |
cgtgatgctggaattggtgctatgttaaacaaatttagcaacatagttgtgtttgagagacccctggatgatcactttactcgtagatggaatttggcaa |
44659939 |
T |
|
| Q |
324 |
gcagtgggaatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatttattgaaaaacgatccatttggtc |
423 |
Q |
| |
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||| |||| |||||||||||||||||| | || ||| ||||||||||| | ||| | ||||| | |||||||| |||||||| ||||||||||| |
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| T |
44659938 |
gcaacaaaaatactgcacatgtggtagtgttgaagcacgttactgttgaaatgctcgactcatttgtccgtgaatttactgaaaaacaatccatttggta |
44659839 |
T |
|
| Q |
424 |
aaaagatgaacaatttaagcctctatgcattgcaaatgatgttggttccaaaaattgtgcttgtt |
488 |
Q |
| |
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||||||||||||||| |||||| ||||||||| || || |||||||| | |||||||||||||| |
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| T |
44659838 |
taaagatgaacaatttcagcctccatgcattgcgaacgacgttggttctagaaattgtgcttgtt |
44659774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 224 - 422
Target Start/End: Complemental strand, 44640198 - 44640000
Alignment:
| Q |
224 |
cgtgatgctggaattggtgctatgttaaacgagttcagcaacatagttgtatttgagaggcccctcgatgatgacttcaatcgtagctggaatttggcat |
323 |
Q |
| |
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|||||||||||||||||| | |||||||| || || ||||||| |||||| ||||||| ||| | ||| ||| || | ||| | |||| ||| |||| |
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| T |
44640198 |
cgtgatgctggaattggtacaatgttaaatgaatttagcaacacagttgtttttgagaagcctttggatattgagtttattcgaaagtggagtttagcat |
44640099 |
T |
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| Q |
324 |
gcagtgggaatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatttattgaaaaacgatccatttggt |
422 |
Q |
| |
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|| ||||||||||||||||| ||| | ||||||||| || |||||||||||||| | |||||| |||| |||| | |||||||| | ||||||| |
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| T |
44640098 |
atcaaggaaatattgcacatgtggtggtgatgcaacatgttactattgaaatgttggactcatttgttgatgagtttactaaaaaacgagcaatttggt |
44640000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 333 - 402
Target Start/End: Complemental strand, 44668402 - 44668333
Alignment:
| Q |
333 |
atattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatttat |
402 |
Q |
| |
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|||||||||||||||| ||| | || || ||| ||||||||||||||||| |||||||| |||| ||||| |
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| T |
44668402 |
atattgcacatgtggtggtgatgcagcacgttactgttgaaatgttggactcctttgttgatgagtttat |
44668333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 24 - 497
Target Start/End: Original strand, 29357572 - 29358045
Alignment:
| Q |
24 |
tgataactcgtttgaaatacatgaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcc |
123 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
29357572 |
tgataactcgtttgaaatatatcaatgcactatctagagatgttgaatatattgcttcaagggatgctacaatcacaggtagccgtagtgggcatgctcc |
29357671 |
T |
|
| Q |
124 |
catcttcctttggtatgctctcnnnnnnnggggtttaataggacttgaaaatgaggtgcatgaatgtataatgaaagcacattatttactaaatctacta |
223 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| || ||||| || |||||||| |||| ||| |||| ||| |||||||||| |||| |
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|
| T |
29357672 |
aatctttctttggtatgctctcaaaaaaaggggtttaataggactcgagaatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaacta |
29357771 |
T |
|
| Q |
224 |
cgtgatgctggaattggtgctatgttaaacgagttcagcaacatagttgtatttgagaggcccctcgatgatgacttcaatcgtagctggaatttggcat |
323 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||| | |||||| |||| | |||||| |||||||| ||| |
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| T |
29357772 |
cgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgagagaccctttgatgatcactttactcgtagatggaatttagcaa |
29357871 |
T |
|
| Q |
324 |
gcagtgggaatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatttattgaaaaacgatccatttggtc |
423 |
Q |
| |
|
||| ||| ||||||||||||||||||||||| | || || || |||||||| | |||||||||||| ||||||||| |||||||||| |||||||| |
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|
| T |
29357872 |
gcaatggaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttgacacctttgtttgtgaatttatccaaaaacgatcgatttggtc |
29357971 |
T |
|
| Q |
424 |
aaaagatgaacaatttaagcctctatgcattgcaaatgatgttggttccaaaaattgtgcttgtttgatgcaca |
497 |
Q |
| |
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||||||| ||||||| ||| || ||| ||||||| || |||||||| | |||||||||||||| ||| |||| |
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| T |
29357972 |
taaagatggacaatttcagcttccatgtattgcaagcgacgttggttctagaaattgtgcttgttcgatacaca |
29358045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 24 - 488
Target Start/End: Original strand, 29341545 - 29342009
Alignment:
| Q |
24 |
tgataactcgtttgaaatacatgaatgcaatatctagagatgttggcatcattgcttcaagggatgccacaatcacaggtagccgttgtgggcatgctcc |
123 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||| |
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| T |
29341545 |
tgataactcgtttgaaatatatcaatgcactatctagagatgttgaatatattgcttcaagggatgctaccatcacaggtagccgtagtgggcatgctcc |
29341644 |
T |
|
| Q |
124 |
catcttcctttggtatgctctcnnnnnnnggggtttaataggacttgaaaatgaggtgcatgaatgtataatgaaagcacattatttactaaatctacta |
223 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||| || ||||| || |||||||| |||| ||| |||| ||| |||||||||| |||| |
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| T |
29341645 |
aatcttactttggtatgctctcaaaaaaaggggtttaataggactcgagaatgaagtacatgaatgcataacgaatgcacgttacttactaaatcaacta |
29341744 |
T |
|
| Q |
224 |
cgtgatgctggaattggtgctatgttaaacgagttcagcaacatagttgtatttgagaggcccctcgatgatgacttcaatcgtagctggaatttggcat |
323 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| ||| | |||||| |||| | |||||| |||||||| ||| |
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| T |
29341745 |
cgtgatgctggaattggtgcaatgttaaacgagtttagcaacatagttgtttttgagagaccctttgatgatcactttactcgtagatggaatttagcaa |
29341844 |
T |
|
| Q |
324 |
gcagtgggaatattgcacatgtggtagtgttacaacatgtttctgttgaaatgttggacacctttgttcatgaatttattgaaaaacgatccatttggtc |
423 |
Q |
| |
|
||| || ||||||||||||||||||||||| | || || || |||||||| | ||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
29341845 |
gcaatgaaaatattgcacatgtggtagtgttgaagcacattactattgaaatgcttgacacctttgttcatgaatttatccaaaaacgatcgatttggtc |
29341944 |
T |
|
| Q |
424 |
aaaagatgaacaatttaagcctctatgcattgcaaatgatgttggttccaaaaattgtgcttgtt |
488 |
Q |
| |
|
||||||| ||| ||| | |||| ||| ||||||| || |||||||| |||||||||||||||| |
|
|
| T |
29341945 |
taaagatggacactttcaacctccatgtattgcaagcgacgttggttctaaaaattgtgcttgtt |
29342009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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