View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_114 (Length: 293)

Name: NF9595A_low_114
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_114
NF9595A_low_114
[»] chr8 (1 HSPs)
chr8 (7-293)||(32253880-32254169)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 7 - 293
Target Start/End: Complemental strand, 32254169 - 32253880
Alignment:
Q  7 gtatcatagaattttgacttacgaactaaaagatccgcttgccatttcccagtaatgatctcaacaaaagacttgaatttcaatccaacattact---at 103  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||   ||    
T  32254169 gtatcatagaattttgacttacgaactaaaagatccgctcgccatttcccagtaatgatctcggcaaaagacttgaatttcaatccaacattactgatat 32254070  T
Q  104 catgatgattgacatcaatagcagtagtccctccagtccataccaacttaaatttatgatcagatgctttgaacatcaaatcattgttcaagacttgaaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32254069 catgatgattgacatcaatagcagtagtccctccagtccatacctacttaaatttatgatcagatgctttgaacatcaaatcattgttcaagacttgaaa 32253970  T
Q  204 gttactcagagtgtaagagttgttctcttctagtagtttgtcataggttgccttgtaagcagttggaatgataacatgtatatcattccc 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32253969 gttactcagagtgtaagagttgttctcttctagtagtttgtcataggttgccttgtaagcagttggaatgataacatgtatatcattccc 32253880  T

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