View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_12 (Length: 521)
Name: NF9595A_low_12
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 15 - 499
Target Start/End: Complemental strand, 47128869 - 47128385
Alignment:
| Q |
15 |
atgaacagtttggtcatgtaaagttttcagactttctagcttattcactcaaatccgtcactcaggttttgcttccagagcttagatctctgtgtgacaa |
114 |
Q |
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| T |
47128869 |
atgaacagtttggtcatgtaaagttttcagactttctagcttattcactcaaatccgtcactcaggttttgcttccagagcttagatctctgtgtgacaa |
47128770 |
T |
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| Q |
115 |
aactattaatgagtttgatacttttcaagatgtacttgatatttatgaaggaagttttaacctcccaagtggacctttgcatagtaaaatcagagacctt |
214 |
Q |
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| T |
47128769 |
aactattaatgagtttgatacttttcaagatgtacttgatatttatgaaggaagttttaacctcccaagtggacctttgcatagtaaaattagagacctt |
47128670 |
T |
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| Q |
215 |
attccttatgagatttttagagaacttgttaggaatgatggtgagaaattcctcagattccctgtgcctgacgtgatcaaaggtatatatagcattttaa |
314 |
Q |
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| T |
47128669 |
attccttatgagatttttagagaacttgttaggaatgatggtgagaaattcctcagattccctgtgcctgacgtgatcaaaggtatatatagcattttaa |
47128570 |
T |
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| Q |
315 |
ccttcctttaataaaatggaatcattgatatgatttttgtttcattaattaattaatattggatataattgtagctagtaagactgcatggaggactgat |
414 |
Q |
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| T |
47128569 |
ccttcctttaataaaatggaatcattgatatgatttttgtttcattaattaattagtattggaaataattgtagctagtaagactgcatggaggactgat |
47128470 |
T |
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| Q |
415 |
gaggagtttggaagagaaatgcttgctggggttaaccctgttatcattcgccgtctccaagtaccactacataatactccctctg |
499 |
Q |
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| T |
47128469 |
gaggagtttggaagagaaatgcttgctggggttaaccctgttatcattcgccgtctccaagtaccactacataatactccctctg |
47128385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 42688087 - 42688139
Alignment:
| Q |
391 |
agtaagactgcatggaggactgatgaggagtttggaagagaaatgcttgctgg |
443 |
Q |
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| T |
42688087 |
agtaagtctgcatggatgacagatgaagagtttgcaagagaaatgcttgctgg |
42688139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 443
Target Start/End: Original strand, 36744657 - 36744707
Alignment:
| Q |
393 |
taagactgcatggaggactgatgaggagtttggaagagaaatgcttgctgg |
443 |
Q |
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| T |
36744657 |
taagtctgcatggatgactgatgaagaatttgcaagagaaatgcttgctgg |
36744707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 6263858 - 6263806
Alignment:
| Q |
391 |
agtaagactgcatggaggactgatgaggagtttggaagagaaatgcttgctgg |
443 |
Q |
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|||||| ||||||||| ||||||||| || ||||||||||| || |||||||| |
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| T |
6263858 |
agtaagtctgcatggatgactgatgatgaatttggaagagagattcttgctgg |
6263806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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