View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_120 (Length: 290)

Name: NF9595A_low_120
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_120
NF9595A_low_120
[»] chr1 (8 HSPs)
chr1 (23-290)||(48585406-48585673)
chr1 (25-290)||(48639979-48640244)
chr1 (80-290)||(48661631-48661841)
chr1 (78-290)||(48667226-48667438)
chr1 (80-252)||(48618046-48618218)
chr1 (80-252)||(48628983-48629155)
chr1 (80-290)||(48653199-48653409)
chr1 (82-198)||(11547402-11547518)
[»] chr8 (1 HSPs)
chr8 (151-290)||(27228246-27228385)
[»] chr3 (1 HSPs)
chr3 (80-243)||(19665402-19665565)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 23 - 290
Target Start/End: Complemental strand, 48585673 - 48585406
Alignment:
Q  23 cagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatcatgctgatttaaacaaaccatt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48585673 cagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaatgatcaagaatcatgctgatttaaacaaaccatt 48585574  T
Q  123 ttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgttttaccatggactaattccgctgctgtt 222  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48585573 ttcatgtatcataaacaattatttttttccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgtt 48585474  T
Q  223 ttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattga 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585473 ttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattga 48585406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 290
Target Start/End: Complemental strand, 48640244 - 48639979
Alignment:
Q  25 gccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaatcatgctgatttaaacaaaccatttt 124  Q
    ||||||||||||||||||||||  |||||||||||||||||||| |||| || |||||| ||||| || ||||||||||| |||| ||||||||||||||    
T  48640244 gccttcagagctcttcagcactatgctgaaattgaggttgctggcagacactttatttcacaaatgataaagaatcatgccgattcaaacaaaccatttt 48640145  T
Q  125 catgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgttttaccatggactaattccgctgctgtttt 224  Q
    |||||||||||||||| ||       |||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  48640144 catgtatcataaacaactatttttttccatgggtttgtgacgttgctaatgaacacaatattccttctgttttgtcatggactaattccgctgctgtttt 48640045  T
Q  225 caccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattga 290  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48640044 caccacttactataactatgtccacaaattaacatctttccctacaaatgaagaaccttatattga 48639979  T

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Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 290
Target Start/End: Complemental strand, 48661841 - 48661631
Alignment:
Q  80 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca 179  Q
    |||||||||| ||||||||||||||||||| |||||||||| |||||||| |||||||||||         ||||||||||||||| | |||  ||||||    
T  48661841 tttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttgaaca 48661742  T
Q  180 caatattccttctgttttaccatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa 279  Q
    |||||||||||||| ||||  |||||||||||||  ||| |||||  ||  || |||| ||||||||||||||||   |||||||||  |||||||||||    
T  48661741 caatattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaattggtacctttcccatcaaatgaagaa 48661642  T
Q  280 ccttatattga 290  Q
    ||||| |||||    
T  48661641 ccttacattga 48661631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 78 - 290
Target Start/End: Complemental strand, 48667438 - 48667226
Alignment:
Q  78 tatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaa 177  Q
    |||||||||||| || ||||||||||||||||  ||||||||| |||||||||| ||||||||          ||||||||| ||||| | |||  ||||    
T  48667438 tatttctcaaatgataaagaatcatgctgattcgaacaaaccaatttcatgtattataaacaaccctttttttccatgggttagtgatatagcttttgaa 48667339  T
Q  178 cacaatattccttctgttttaccatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaag 277  Q
    |||||||||||||||| |||   ||||||||||||   |||||||||||||| || |||| | ||||||||||||||   |||||||||| |||||||||    
T  48667338 cacaatattccttctgctttgttatggactaattctagtgctgttttcaccatttgctatgattatgtccacaaattgttacctttcccttcaaatgaag 48667239  T
Q  278 aaccttatattga 290  Q
    |||||||||||||    
T  48667238 aaccttatattga 48667226  T

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Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 252
Target Start/End: Original strand, 48618046 - 48618218
Alignment:
Q  80 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca 179  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||         ||||||||||||||||| ||| |||||||    
T  48618046 tttctcaaatgatcaagaatcatgctgattcaaacaaaccattttcatgtatcataaacaatccttttgttccatgggtttgtgatgtagctgatgaaca 48618145  T
Q  180 caatattccttctgttttaccatggactaattccgctgctgttttcaccacttactataactatgtccacaaa 252  Q
       ||||||||||| |||   ||||| | | ||  ||||||||||  |  |||||||||||||| ||||||||    
T  48618146 tggtattccttctgctttgttatggattcaatcaactgctgttttttctgcttactataactatttccacaaa 48618218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 252
Target Start/End: Complemental strand, 48629155 - 48628983
Alignment:
Q  80 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca 179  Q
    ||||| |||| ||||||||||||||||||| ||  |||||| |||||||||||||| |||||         ||||||||||| ||||| |||  ||||||    
T  48629155 tttctaaaatgatcaagaatcatgctgattcaagtaaaccaatttcatgtatcatatacaatccttttcttccatgggtttgcgatgtagcttttgaaca 48629056  T
Q  180 caatattccttctgttttaccatggactaattccgctgctgttttcaccacttactataactatgtccacaaa 252  Q
      | |||||||||| |||| |||||| ||||||   |||||||||| ||||||||||||||||||||||||||    
T  48629055 tgacattccttctgctttatcatggaataattctagtgctgttttcgccacttactataactatgtccacaaa 48628983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 290
Target Start/End: Complemental strand, 48653409 - 48653199
Alignment:
Q  80 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca 179  Q
    |||||||||| ||||||||||||||||| | |||||||||| |||||||| ||||||| |||         || |||||||||||||| ||| |||||||    
T  48653409 tttctcaaatgatcaagaatcatgctgagtcaaacaaaccaatttcatgtctcataaataatccctttcttccttgggtttgtgatgtagctgatgaaca 48653310  T
Q  180 caatattccttctgttttaccatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa 279  Q
       ||||||||||||||||  ||||  | | ||| | |||||| | ||| ||||||| |||||| |||||||| |   || ||||||| |||||||||||    
T  48653309 tggtattccttctgttttattatgggttcaatccaccgctgttcttaccgcttactacaactatttccacaaactggtacgtttcccttcaaatgaagaa 48653210  T
Q  280 ccttatattga 290  Q
    |||||||||||    
T  48653209 ccttatattga 48653199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 11547518 - 11547402
Alignment:
Q  82 tctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacaca 181  Q
    |||||||| ||||||||||||| ||| | |||||||||| |||| |||||||||||||||         || |||||||||||||| ||| |||||||      
T  11547518 tctcaaatgatcaagaatcatgttgagtcaaacaaaccaatttcttgtatcataaacaatccttttgttccttgggtttgtgatgtagctcatgaacatg 11547419  T
Q  182 atattccttctgtttta 198  Q
     ||||||||||||||||    
T  11547418 gtattccttctgtttta 11547402  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 290
Target Start/End: Complemental strand, 27228385 - 27228246
Alignment:
Q  151 ccatgggtttgtgatgttgctaatgaacacaatattccttctgttttaccatggactaattccgctgctgttttcaccacttactataactatgtccaca 250  Q
    ||||||||| ||||||| |||  ||||| | | |||||||||| ||||  ||||| | | |||| |||||||||| |  |||||||||||||| | ||||    
T  27228385 ccatgggttagtgatgtagctgctgaactcgagattccttctgctttattatggattcaatccggtgctgttttcgcagcttactataactattttcaca 27228286  T
Q  251 aattaacacctttccctacaaatgaagaaccttatattga 290  Q
    || |   || ||||||| | |||| |||||||||||||||    
T  27228285 aactggtacgtttcccttcgaatgcagaaccttatattga 27228246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 243
Target Start/End: Original strand, 19665402 - 19665565
Alignment:
Q  80 tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca 179  Q
    |||||||||| || |||||||||  ||| | |||||||||  |||| || ||||||||||||         ||||||||||||||||| |||  | ||||    
T  19665402 tttctcaaatgattaagaatcataatgagtcaaacaaacctatttcttgcatcataaacaatccttttcttccatgggtttgtgatgtagcttctcaaca 19665501  T
Q  180 caatattccttctgttttaccatggactaattccgctgctgttttcaccacttactataactat 243  Q
      |||||||||||| |||   ||||| | | ||| |||||||||||||  ||||||||||||||    
T  19665502 tgatattccttctgctttgttatggattcaatccactgctgttttcactgcttactataactat 19665565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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