View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_130 (Length: 285)
Name: NF9595A_low_130
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_130 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 4 - 282
Target Start/End: Original strand, 6355922 - 6356200
Alignment:
| Q |
4 |
ccaataatatcaaaggcaccaccaatgataccagtagggcttttagcagcagtgagggcgatgatatccaaagtattcttttgcatcaacaccacagttc |
103 |
Q |
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| T |
6355922 |
ccaacaataccaaaggcaccaccaatgataccagtagggcttttagcagcagtgagggcgttgatatccaaagtattcttttgcatcaacaccacagttc |
6356021 |
T |
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| Q |
104 |
ccttcaacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatttggtaaatgaaagaaag |
203 |
Q |
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| T |
6356022 |
ccttcaacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatatggtaaatgaaagaaag |
6356121 |
T |
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| Q |
204 |
gcttgtgtcttgtaaccataggggtggttagtatttatagtagttgatgagattaggatcacaatgttatagttcaaat |
282 |
Q |
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| T |
6356122 |
gcttgtgtcttgtaaccataggggtggttagtatttatagtagttgatgagattaggatcacaatgttatagttcaaat |
6356200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 7463023 - 7463269
Alignment:
| Q |
4 |
ccaataatatcaaaggcaccaccaatgataccagtagggcttttagcagcagtgagggcgatgatatccaaagtattcttttgcatcaacaccacagttc |
103 |
Q |
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| T |
7463023 |
ccaataatacctatggcaccaccaatgatacctgtagggttattagttgcagttagggcatcaatgtccaacgcattcttttgcatcaacaccacagttc |
7463122 |
T |
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| Q |
104 |
ccttcaacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtattacactatatttggtaaatgaaagaaag |
203 |
Q |
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| T |
7463123 |
ccttcaacttttggcctctatcaaagagaccagttacccctgaaaacatctttgaatatgctttaaatatattacactatatttggtaaatgaaagaaat |
7463222 |
T |
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| Q |
204 |
gcttgtgtcttgtaaccataggggtggttagtatttatagtagttga |
250 |
Q |
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| T |
7463223 |
gcctgtgtcttgtaaccatgggggtgcttagtatctatagtagttga |
7463269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 78 - 251
Target Start/End: Original strand, 6365430 - 6365599
Alignment:
| Q |
78 |
attcttttgcatcaacaccacagttcccttcaacttttggcctctatcaaagagacctgttacaccagaaaacatctttgaatatgctttaaatgtatta |
177 |
Q |
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| T |
6365430 |
attcttttgcatcaacaccacagttcccttcaccttttggtgcttatcaaagagacctttcaccaatgaactcatctttaa---tgctt-aaatgtatta |
6365525 |
T |
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| Q |
178 |
cactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttatagtagttgat |
251 |
Q |
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| T |
6365526 |
cactatctttggtaaatgaaagaaaagcttgtgttttgttaccaaggggatgcttagtatttatagtagttgat |
6365599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 6373177 - 6373264
Alignment:
| Q |
166 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccatagggg-tggttagtatttatagtagttgatg |
252 |
Q |
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| T |
6373177 |
ttaaatgtattacactatctttgtcaaatgaaagaaatgtttgtgtcttgtaaccattggggatgcttactatttatagtacttgatg |
6373264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 6393093 - 6393179
Alignment:
| Q |
166 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttatagtagttgatg |
252 |
Q |
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| T |
6393093 |
ttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccatggggatgcttggtatttatactacttgatg |
6393179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 6412233 - 6412320
Alignment:
| Q |
166 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccat-aggggtggttagtatttatagtagttgatg |
252 |
Q |
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| T |
6412233 |
ttaaatgtattacactatctttggctaatgaaagaaatgtttgtgtcttgtaaccttgtgggatgcttagtatttatagtacttgatg |
6412320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 6373611 - 6373685
Alignment:
| Q |
166 |
ttaaatgtattacactatatttggtaaatgaaagaaaggcttgtgtcttgtaaccataggggtggttagtatttat |
241 |
Q |
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| T |
6373611 |
ttaaacgtattacaatatctttggctaatgaaagaaaagcttgtgtcttttaaccata-gggtggtttgtatttat |
6373685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 6426643 - 6426680
Alignment:
| Q |
78 |
attcttttgcatcaacaccacagttcccttcaactttt |
115 |
Q |
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| T |
6426643 |
attcttttgcatcaacaccacagttccctttaactttt |
6426680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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