View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_140 (Length: 277)
Name: NF9595A_low_140
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_140 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 6976695 - 6976585
Alignment:
| Q |
10 |
ggacatcagacacgatattgacattgataggactaatgatacataacacctcacctccttttcattgccataatattgagcgcaatctatatgacgatat |
109 |
Q |
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| T |
6976695 |
ggacatcagacacgatattgacattgataggactaatgatacataacacctcacctccttttcattgccataatattgagcacaatctatatgacgatat |
6976596 |
T |
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| Q |
110 |
ccaacctacat |
120 |
Q |
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| T |
6976595 |
ccaacctacat |
6976585 |
T |
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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 6957183 - 6957129
Alignment:
| Q |
62 |
acctccttttcattgccataatattgagcgcaatctatatgacgatatccaacct |
116 |
Q |
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| T |
6957183 |
acctccttttcattgccataaatttgagcacaatctatatgacgataaccaacct |
6957129 |
T |
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