View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_144 (Length: 274)
Name: NF9595A_low_144
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_144 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 12487569 - 12487819
Alignment:
| Q |
18 |
tcactgatattattatagtttgcaactacacaaactaactagttgaatgtgagtgtgctttcaatggaaaattgacaatgcggtcttagtttgttttaaa |
117 |
Q |
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| T |
12487569 |
tcactgatattattatagtttgcaactacacaaactaactagttgaatgtgagtgtgctttcaatggaaaattgacaatgtggtcttagtttgttttaaa |
12487668 |
T |
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| Q |
118 |
gtctgtcagtcaagttcaatacagtgttttcgaatgtcggccatggtggatattggtggctatttttgggctcgcccccatggtaaatatcggctgatgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12487669 |
gtctgtcagtcaagttcaatacagtgttttcgaatgtcggccatggtgcatattggtggctatttttgggctcgcccccatggtaaatatcggctgatgt |
12487768 |
T |
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| Q |
218 |
tgtaggtttttccgccataatcctctatgacggcaccacagggcagccagt |
268 |
Q |
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| T |
12487769 |
tgtaggtttttccgccataatcctctatgacggcaccacagggcagccagt |
12487819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 44 - 227
Target Start/End: Original strand, 12541412 - 12541599
Alignment:
| Q |
44 |
tacacaaactaactagttgaatgtgagtgtgctttcaatggaaaattgacaatgcggtcttagtttgttttaaagtctgtcagtcaagttcaat-----a |
138 |
Q |
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| T |
12541412 |
tacacaaactaaataattgaatgtgagtgtgcttt-aatggaaaattgacaacgtggtcttagtttgttttaaagtctgtcagtcaagttcaatacaata |
12541510 |
T |
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| Q |
139 |
cagtgttttcgaatgtcggccatggtggatattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttt |
227 |
Q |
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| T |
12541511 |
cagtgttttcgaatgtcggccatggaggatatcggtggcgatttttgggcttgccctctttgtaaatatcgactgacgttgtaggtttt |
12541599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 12509274 - 12509402
Alignment:
| Q |
99 |
ggtcttagtttgttttaaagtctgtcagtcaagttcaatacagtgttttcgaatgtcggccatggtggatattggtggctatttttgggctcgcccccat |
198 |
Q |
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||||||| | ||||||||||| || ||||||||||||| | ||||| |||||| |||||||||| |||||| |||||| ||||||||||| |||||| | |
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| T |
12509274 |
ggtcttattatgttttaaagtttgagagtcaagttcaatcctgtgttatcgaatatcggccatggaggatatcggtggcgatttttgggcttgccccctt |
12509373 |
T |
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| Q |
199 |
ggtaaatatcggctgatgttgtaggtttt |
227 |
Q |
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||| |||||| |||| |||||||||||| |
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| T |
12509374 |
cgtagatatcgactgacgttgtaggtttt |
12509402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 12508899 - 12508940
Alignment:
| Q |
51 |
actaactagttgaatgtgagtgtgctttcaatggaaaattga |
92 |
Q |
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| T |
12508899 |
actaagtagttgaatgcgagtgtgctttcaatggaaaattga |
12508940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 34498964 - 34498884
Alignment:
| Q |
167 |
atattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatga |
247 |
Q |
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| T |
34498964 |
atatcggtggcggtttttgggctcgccgcaatggtaaatatcggtcgatattgcaggtctttccagcataatcctctatga |
34498884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 27610489 - 27610409
Alignment:
| Q |
167 |
atattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatga |
247 |
Q |
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| T |
27610489 |
atatcggtggcggtttttgggctcgccgcaatggtaaatatcggtcaatattgcaggtctttccagcataatcctctatga |
27610409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 40554471 - 40554379
Alignment:
| Q |
165 |
ggatattggtggctatttttgggctcgcccccatggtaaatatcggctgatgttgtaggtttttccgccataatcctctatgacggcaccaca |
257 |
Q |
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|||||| |||||| |||||||||||| || ||||| ||| ||||||||| | | ||| ||||||||||| |||| ||||||||| ||||| |
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| T |
40554471 |
ggatatcggtggcaatttttgggctctccgccatgcccaatttcggctgatatggcaggattttccgccatgatccgatatgacggcgccaca |
40554379 |
T |
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