View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_147 (Length: 270)

Name: NF9595A_low_147
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_147
NF9595A_low_147
[»] chr3 (6 HSPs)
chr3 (18-270)||(11897148-11897400)
chr3 (17-270)||(26432593-26432846)
chr3 (17-174)||(23424497-23424654)
chr3 (17-133)||(38647217-38647333)
chr3 (17-132)||(53608336-53608451)
chr3 (83-132)||(49149802-49149851)
[»] chr8 (3 HSPs)
chr8 (18-270)||(23132480-23132732)
chr8 (24-138)||(26587230-26587344)
chr8 (17-45)||(38348466-38348494)
[»] chr1 (5 HSPs)
chr1 (18-270)||(20284849-20285101)
chr1 (16-154)||(50236579-50236717)
chr1 (16-171)||(50451893-50452048)
chr1 (74-132)||(23465403-23465461)
chr1 (20-129)||(1524969-1525078)
[»] chr2 (10 HSPs)
chr2 (18-270)||(14653575-14653827)
chr2 (22-171)||(26791322-26791471)
chr2 (17-168)||(35135219-35135370)
chr2 (17-168)||(40328174-40328325)
chr2 (74-183)||(16322502-16322611)
chr2 (95-168)||(3779048-3779121)
chr2 (95-171)||(573266-573342)
chr2 (95-155)||(19265490-19265550)
chr2 (90-176)||(42403209-42403295)
chr2 (26-171)||(177504-177649)
[»] scaffold0036 (1 HSPs)
scaffold0036 (81-171)||(75967-76057)
[»] chr4 (4 HSPs)
chr4 (17-168)||(54477407-54477558)
chr4 (17-108)||(33803974-33804065)
chr4 (22-174)||(46784469-46784621)
chr4 (90-171)||(3881787-3881868)
[»] chr5 (2 HSPs)
chr5 (65-171)||(32874457-32874563)
chr5 (17-171)||(7817131-7817285)
[»] chr6 (4 HSPs)
chr6 (17-174)||(24893833-24893990)
chr6 (74-174)||(24990660-24990760)
chr6 (64-171)||(27852952-27853059)
chr6 (74-180)||(13599639-13599745)
[»] chr7 (1 HSPs)
chr7 (74-154)||(16769979-16770059)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 11897148 - 11897400
Alignment:
Q  18 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 11897247  T
Q  118 ccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 217  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  11897248 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcaccc 11897347  T
Q  218 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11897348 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 11897400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 26432846 - 26432593
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 116  Q
    |||||||||||||| |||||||||||||| ||  ||||  | |  ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |    
T  26432846 gacatcaccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtc 26432747  T
Q  117 tccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcacc 216  Q
    |||||||||||||||| |||||||||||||| ||||||  ||||||||||||||| || |||||||| ||||| || |||  |||||||||||||| |||    
T  26432746 tccgacaaggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 26432647  T
Q  217 catccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 270  Q
     || |||||||| ||||||||||||||||||||||| ||||| |||||| ||||    
T  26432646 gattcaaatcactcctacggggccgcatttatcccacctcctttttgcaaatga 26432593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 23424497 - 23424654
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgt-agcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggc 115  Q
    ||||||||||||||||||||||| ||||| || | || ||||   || ||| ||| | ||||| || |||||  |||| |||||||||||  | |||||     
T  23424497 gacatcaccatcaagctcatcatacattgtgtcacctcctccacatt-ctcaatattatggaaaggtaacaaaatgccccctttcaagcccacacatggt 23424595  T
Q  116 ctccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagctttc 174  Q
    ||| |||||||||| ||| | || |||||||||||||| |  |||||||||||||||||    
T  23424596 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 23424654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 38647333 - 38647217
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 116  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  | |||||| ||||||||||| || ||  |||| ||||| |||||||| || || |    
T  38647333 gacatcaccatcaagctcatcatgcattgtgtttcatcatccaccttctctattctttggaacggtaataaaatgcccccttttaagccttcccacggtc 38647234  T
Q  117 tccgacaaggtgatccg 133  Q
    || ||||||||||||||    
T  38647233 tcagacaaggtgatccg 38647217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 53608451 - 53608336
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 116  Q
    ||||||||||||||||||||||||||||| ||  | ||  |||  | |||||| |||||||| || |||||  ||||  |||||| |||||| ||||| |    
T  53608451 gacatcaccatcaagctcatcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaaaatgccttctttcaggccttcacatggtc 53608352  T
Q  117 tccgacaaggtgatcc 132  Q
    || |||| ||||||||    
T  53608351 tcagacagggtgatcc 53608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 132
Target Start/End: Complemental strand, 49149851 - 49149802
Alignment:
Q  83 aacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatcc 132  Q
    ||||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  49149851 aacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 49149802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 23132732 - 23132480
Alignment:
Q  18 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 23132633  T
Q  118 ccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 217  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  23132632 ccgacaaggtgatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 23132533  T
Q  218 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 270  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23132532 atccaaatcacccctacggggccccatttatcccatctcctatttgcagatga 23132480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 26587230 - 26587344
Alignment:
Q  24 ccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgaca 123  Q
    ||||||| |||||||||||||||||  ||||  |||  | | | || ||||| || || ||||| ||||| || ||||||||| ||||||||||||||||    
T  26587230 ccatcaaactcatcatgcattgcgtcacttcatctaccttcaccatcctttgaaatggtaacaaattgccccccttcaagcctactcatggcctccgaca 26587329  T
Q  124 aggtgatccgttgtc 138  Q
    |||||| || |||||    
T  26587330 aggtgacccattgtc 26587344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 38348466 - 38348494
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattg 45  Q
    |||||||||||||||||||||||||||||    
T  38348466 gacatcaccatcaagctcatcatgcattg 38348494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 20284849 - 20285101
Alignment:
Q  18 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||    
T  20284849 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcct 20284948  T
Q  118 ccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 217  Q
     ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  20284949 gcgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 20285048  T
Q  218 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20285049 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 20285101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 50236717 - 50236579
Alignment:
Q  16 ggacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggc 115  Q
    ||||||||||| ||| |||||||||||||| ||  | || || |  ||||||||  | ||||||||||||||| |||| |||||||||||| ||||||||    
T  50236717 ggacatcaccaccaaactcatcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggc 50236618  T
Q  116 ctccgacaaggtgatccgttgtccccttatcttttcatc 154  Q
    ||| || ||||||||||| | |||||||| |||||||||    
T  50236617 ctcagataaggtgatccgctttccccttaccttttcatc 50236579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 50451893 - 50452048
Alignment:
Q  16 ggacatcaccatcaagctcatcatgcattgcgt-agcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatgg 114  Q
    ||||||||||||||| || ||||||||||| || | || |||| | || ||||||  | ||||| || |||||  |||||| |||||| ||| | |||||    
T  50451893 ggacatcaccatcaaacttatcatgcattgtgtcacctcctcc-actttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatgg 50451991  T
Q  115 cctccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagct 171  Q
    ||||||||||||||||||| | || ||||| || ||||| | ||| ||||| |||||    
T  50451992 cctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagct 50452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 23465403 - 23465461
Alignment:
Q  74 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatcc 132  Q
    ||||| || ||||| ||||||| |||||||||| ||||||| || ||||||||||||||    
T  23465403 tggaatggtaacaaattgccgcatttcaagcctactcatggtcttcgacaaggtgatcc 23465461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 1524969 - 1525078
Alignment:
Q  20 atcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctcc 119  Q
    ||||||||||| |||||||||||||| ||  | ||||||   | |||||| |||||||| || ||||| || || |||||||||||||| || || || |    
T  1524969 atcaccatcaaactcatcatgcattgtgttacctctcctgccttctctattctttggaatggtaacaaattacctcctttcaagccttcccacggtcttc 1525068  T
Q  120 gacaaggtga 129  Q
    | ||||||||    
T  1525069 ggcaaggtga 1525078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 14653827 - 14653575
Alignment:
Q  18 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T
Q  118 ccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagctttcagctgctatgaactcagcagtcggccaaggaagatgggcaccc 217  Q
    || ||||||||||||||||||||||||| ||||||||| ||||||||||||||| || |||||||| ||||||||||| | |||||||||||||||||||    
T  14653727 ccaacaaggtgatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcaccc 14653628  T
Q  218 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatga 270  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14653627 atccaaatcactcctacggggccgcatttatcccatctcctatttgcagatga 14653575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 26791322 - 26791471
Alignment:
Q  22 caccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccga 121  Q
    |||||||||||||||||||||||||||  ||||  | || | |||||| |||||||| || || | |||||| |||||| ||||| ||||||||||| |     
T  26791322 caccatcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcagg 26791421  T
Q  122 caaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagct 171  Q
    || ||||||||| | ||||| || ||||| || | ||||||||| |||||    
T  26791422 cagggtgatccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 35135370 - 35135219
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 116  Q
    ||||| |||||||| |||||||||||||| ||  | || || || ||||| ||  | ||||| || |||||| |  | |||||||||||| ||||||| |    
T  35135370 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggac 35135271  T
Q  117 tccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaa 168  Q
    | || |||||||| |||||||| ||||||||||||||||  || ||||||||    
T  35135270 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 35135219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 40328174 - 40328325
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 116  Q
    ||||| |||||||| |||||||||||||| ||  | || || || ||||| ||  | ||||| || |||||| |  | |||||||||||| ||||||| |    
T  40328174 gacattaccatcaaactcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggac 40328273  T
Q  117 tccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaa 168  Q
    | || |||||||| |||||||| ||||||||||||||||  || ||||||||    
T  40328274 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaa 40328325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 16322502 - 16322611
Alignment:
Q  74 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagcttt 173  Q
    ||||| || |||||| |||| |||||||||||  |||||||||| ||||||||||| ||| | || || || |||||||| | |||||||||||| ||||    
T  16322502 tggaatggaaacaagatgcctcctttcaagcccactcatggccttcgacaaggtgacccgctttctccgtaccttttcatactttgcatggaaaaacttt 16322601  T
Q  174 cagctgctat 183  Q
    | | ||||||    
T  16322602 ctgttgctat 16322611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 3779121 - 3779048
Alignment:
Q  95 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaa 168  Q
    |||||||||||| ||||||| || || |||||||| ||| |||| ||||||||||||||||  || ||||||||    
T  3779121 cctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaa 3779048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 573266 - 573342
Alignment:
Q  95 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagct 171  Q
    ||||| || ||||| ||||||||| |||||||||||||| | || ||||| || ||||||| ||||||||| |||||    
T  573266 ccttttaaaccttcccatggcctcagacaaggtgatccgctctctccttacctattcatcctttgcatggagaagct 573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 19265490 - 19265550
Alignment:
Q  95 cctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcc 155  Q
    |||||||||||| ||||||| || || |||||||| ||| |||| ||||||||||||||||    
T  19265490 cctttcaagcctactcatggacttcgtcaaggtgacccgctgtctccttatcttttcatcc 19265550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 176
Target Start/End: Complemental strand, 42403295 - 42403209
Alignment:
Q  90 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagctttcag 176  Q
    |||| |||||||||||  ||||||||||||| |||||||| ||  | || |||||||| || || |  |||||||||||||||||||    
T  42403295 tgcctcctttcaagcccactcatggcctccggcaaggtgaccctctctcaccttatctatttatactgtgcatggaaaagctttcag 42403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 177504 - 177649
Alignment:
Q  26 atcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaag 125  Q
    ||||| |||||||||||||| ||  ||||| | |  | |||| | |||||||| || ||||| | ||| ||| |||||||| ||||||| ||  ||||||    
T  177504 atcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaag 177603  T
Q  126 gtgatccgttgtccccttatcttttcatcccttgcatggaaaagct 171  Q
    |||| || ||||| ||||| || ||||||   ||||||||||||||    
T  177604 gtgaccctttgtctccttacctattcatcatctgcatggaaaagct 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 75967 - 76057
Alignment:
Q  81 ggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagct 171  Q
    |||||||| ||||  | ||||||||| ||||||| ||| |||||||||| | ||||||||||||||||||||||| |||||||||||||||    
T  75967 ggaacaagctgccttccttcaagcctactcatggtctcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagct 76057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 54477558 - 54477407
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 116  Q
    ||||||||||||||||||||||||||||| ||  | ||  | |  |||| ||| |||||||| || |||||| | ||  ||||||||||| | ||||| |    
T  54477558 gacatcaccatcaagctcatcatgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtc 54477459  T
Q  117 tccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaa 168  Q
    | || ||||||||||| |||||||||||||| ||||| | ||||||||||||    
T  54477458 tgcgccaaggtgatcctttgtccccttatctcttcattctttgcatggaaaa 54477407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 33803974 - 33804065
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttc 108  Q
    ||||||||||||||||||||||||||||| ||  | ||  |||  ||||||||||| ||||| || |||||  |||| ||||||||||||||    
T  33803974 gacatcaccatcaagctcatcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaaatgcctcctttcaagccttc 33804065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 46784621 - 46784469
Alignment:
Q  22 caccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccga 121  Q
    |||||||||||||||||||||||| ||  | ||  | | || |||  | |||||||| || || || |||||||||||||| ||| ||||||||||  ||    
T  46784621 caccatcaagctcatcatgcattgtgttacgtcatcaactttctccgtcctttggaatggaaataaattgccgcctttcaaacctactcatggccttaga 46784522  T
Q  122 caaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagctttc 174  Q
    |||||||||||  | || || || || ||||||| ||||||| |||| |||||    
T  46784521 caaggtgatcctctatctccctacctcttcatcctttgcatgaaaaaactttc 46784469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 3881787 - 3881868
Alignment:
Q  90 tgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagct 171  Q
    |||||| |||||| ||| | |||||||||||||||||||||||| | || | ||| || ||||| | ||| |||||||||||    
T  3881787 tgccgcatttcaaacctacacatggcctccgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagct 3881868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  65 tctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcccttgcatgg 164  Q
    ||||| ||||| || |||||||||||||| |||||||||||||||||||||||||| ||||| || ||| | || || ||| | ||||||  ||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  165 aaaagct 171  Q
    |||||||    
T  32874463 aaaagct 32874457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 7817131 - 7817285
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcc 116  Q
    |||||||| |||||||||||||||||||| ||| | ||  | |  ||||||||  | ||||| ||||||||  | ||  ||||||||||| ||||||| |    
T  7817131 gacatcacaatcaagctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 7817230  T
Q  117 tccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagct 171  Q
    || |||| ||||| || || || ||||| |||||||| | |||||||||||||||    
T  7817231 tcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagct 7817285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 24893990 - 24893833
Alignment:
Q  17 gacatcaccatcaagctcatcatgcattgcgt-agcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggc 115  Q
    ||||||||||||||||||||||||||||| || | || ||||   || ||| ||| | ||||| || |||||  |||| |||||||||||  | |||||     
T  24893990 gacatcaccatcaagctcatcatgcattgtgtcacctcctccacatt-ctccatattatggaatggtaacaaaatgccccctttcaagcccacacatggt 24893892  T
Q  116 ctccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagctttc 174  Q
    ||| |||||||||| ||| | || |||||||||||||| |  |||||||||||||||||    
T  24893891 ctcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagctttc 24893833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 174
Target Start/End: Complemental strand, 24990760 - 24990660
Alignment:
Q  74 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagcttt 173  Q
    |||||||| |||||  |||| |||||||||||  | ||||| ||| |||||||||| ||| | || |||||||||||||| | ||||||||| |||||||    
T  24990760 tggaacggtaacaaaatgccccctttcaagcccacccatggtctcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagcttt 24990661  T
Q  174 c 174  Q
    |    
T  24990660 c 24990660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 27853059 - 27852952
Alignment:
Q  64 ctctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcccttgcatg 163  Q
    |||||| ||||||||||| |||||  ||||  ||||||||||||||||||| ||  ||||||| || || || || |||||  | ||||||| ||| |||    
T  27853059 ctctattctttggaacggaaacaaaatgccttctttcaagccttctcatggtctaagacaaggggaccctttatctccttacttattcatcctttgtatg 27852960  T
Q  164 gaaaagct 171  Q
    ||||||||    
T  27852959 gaaaagct 27852952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 13599639 - 13599745
Alignment:
Q  74 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatcccttgcatggaaaagcttt 173  Q
    ||||| || |||||||| ||||  ||||||||| ||||||  ||||| |||||||||||  | || |||||||| ||||||   || |||||||| ||||    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  174 cagctgc 180  Q
    |||||||    
T  13599739 cagctgc 13599745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 16770059 - 16769979
Alignment:
Q  74 tggaacgggaacaagttgccgcctttcaagccttctcatggcctccgacaaggtgatccgttgtccccttatcttttcatc 154  Q
    ||||| || ||||| ||||||| |||||| ||| ||||||| || ||||||||||||||  | || |||||||| ||||||    
T  16770059 tggaatggtaacaaattgccgcatttcaaacctactcatggtcttcgacaaggtgatcctctttcaccttatctcttcatc 16769979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University