View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_150 (Length: 268)
Name: NF9595A_low_150
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_150 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 8349002 - 8348795
Alignment:
| Q |
1 |
agagtttgcatccactgcaagaagggaaaggtataaatttcttggctagtctagagctttgctagttttggatggtttttacttattattgcctactaca |
100 |
Q |
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| T |
8349002 |
agagtttgcatccactacaagaagggaaaggtataaatttcttggctagtctacagctttgctagttttggatggtttttacttattattgcctactaca |
8348903 |
T |
|
| Q |
101 |
ca--ttctcttaattaagctatagtttttaatatttgatttgtgagcttatagctctgcatagagaaagcaaattcctgggttttgctatggaattgact |
198 |
Q |
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| T |
8348902 |
cacattctcttaattaagctatagtttttaatatttgatttgtgagcttatagctctgcatagagaaagcaaattcctgggttttgctatggaattgact |
8348803 |
T |
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| Q |
199 |
tttagaag |
206 |
Q |
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|||||||| |
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| T |
8348802 |
tttagaag |
8348795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 37 - 217
Target Start/End: Complemental strand, 8355000 - 8354820
Alignment:
| Q |
37 |
atttcttggctagtctagagctttgctagttttggatggtttttacttattattgcctactacacattctcttaattaagctatagtttttaatatttga |
136 |
Q |
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| T |
8355000 |
atttcttggctactcaatagttttgctagttttggctggtttttacttattattgcttactacacattctcttaactaagctatagtttttaatatttga |
8354901 |
T |
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| Q |
137 |
tttgtgagcttatagctctgcatagagaaagcaaattcctgggttttgctatggaattgacttttagaagtaggttacttt |
217 |
Q |
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| T |
8354900 |
tttgtgagcttatagctccgcatagagaaagaaaattgctggtttttggaatggaattggcttttagaggaaggttacttt |
8354820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 8410706 - 8410525
Alignment:
| Q |
26 |
gaaaggtataaatttcttggctagtctagagctttgctagttttggatggtttttacttatta-------ttgccta------ctacacattctcttaat |
112 |
Q |
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||||||||| |||||||||||| |||| | ||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
8410706 |
gaaaggtatctatttcttggctactctataactttgctagttttggctggtttttacttattaattattattgcctatagctactacacattctcttaat |
8410607 |
T |
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| Q |
113 |
taagctatagtttttaatatttgatttgtgagcttatagctctgcatagagaaagcaaattcctgggttttgctatggaattg |
195 |
Q |
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| T |
8410606 |
taagatatagtttttaatgtttgatttgtgagc-tatagctctgcatagagaaagcgaattgctggatttgggtatggaattg |
8410525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 8361487 - 8361410
Alignment:
| Q |
178 |
ggttttgctatggaattgacttttagaagtaggttacttttctatgtcttgtccttacaggtgcaactttccctattt |
255 |
Q |
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| T |
8361487 |
ggttttggtatggagttggcttttagatgtaggtttcctttctatgtcttgtccttatatgtgcaactttccatattt |
8361410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 30938628 - 30938593
Alignment:
| Q |
188 |
tggaattgacttttagaagtaggttacttttctatg |
223 |
Q |
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| T |
30938628 |
tggaattgacttttagaggtaggttacttttctatg |
30938593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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