View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_158 (Length: 262)
Name: NF9595A_low_158
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_158 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 256
Target Start/End: Original strand, 2906165 - 2906417
Alignment:
| Q |
4 |
aaaatcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgcca |
103 |
Q |
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| T |
2906165 |
aaaatcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacacgacgctctccaccgccg |
2906264 |
T |
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| Q |
104 |
ccaccaataggggaatgagaaggggattttgtaccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtat |
203 |
Q |
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| T |
2906265 |
ccaccaacaggggaatgagaaggggattttgtaccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtat |
2906364 |
T |
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| Q |
204 |
taccataattgtttgtatgatgttcatcaaattgaacattaataggtctaatg |
256 |
Q |
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| T |
2906365 |
taccataattgtttgtatgatgttcatcaaattgaacattaataggtctaatg |
2906417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 4 - 256
Target Start/End: Original strand, 2854137 - 2854389
Alignment:
| Q |
4 |
aaaatcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgcca |
103 |
Q |
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| T |
2854137 |
aaaatcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctcccatctccacaactgtgccaaattgaacccgacactcctcaccgcca |
2854236 |
T |
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| Q |
104 |
ccaccaataggggaatgagaaggggattttgtaccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtat |
203 |
Q |
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| T |
2854237 |
ccaccaacaggggaatgagaaggggattttgtaccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtat |
2854336 |
T |
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| Q |
204 |
taccataattgtttgtatgatgttcatcaaattgaacattaataggtctaatg |
256 |
Q |
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| T |
2854337 |
taccataattgtttgtatgatgttcatcaaattgaacattaataggtctaatg |
2854389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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