View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_173 (Length: 251)
Name: NF9595A_low_173
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_173 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 32024762 - 32024990
Alignment:
| Q |
1 |
attttcacttcaaaatgctatgtaatcgtgtggtggcggtgaaaagaagacaaaccaaacatacacttagtttgttcgttgacctttgataatctttaat |
100 |
Q |
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| T |
32024762 |
attttcacttcaaaatgctatgtaatcgtgtggtggcggtgaaaagaagacaaaccaaacatacacttagtttgtt----gacctttgataatctttaat |
32024857 |
T |
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| Q |
101 |
aatgaggaaaatagatatgtgagtctcttttgggttgaactgtgtgattaaatggaattttgatgatctgtgtgtttgacttcttttgggttgttttcta |
200 |
Q |
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| T |
32024858 |
aatgaggaaaatagatatgtgagtctcttttgggttgaactgtgtgattaaatggaattttgatgatctgtgtgtttgacttcttttgggttgttttcta |
32024957 |
T |
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| Q |
201 |
tttaatttgttgatttgggtttatgtttgatgt |
233 |
Q |
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| T |
32024958 |
tttaatttgttgatttgggtttatgtttgatgt |
32024990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 32026304 - 32026389
Alignment:
| Q |
115 |
atatgtgagtctcttttgggttgaactgtgtgattaaatggaattttgatgatctgtgtgtttgacttcttttgggttgttttcta |
200 |
Q |
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| T |
32026304 |
atatgtgaatctcttttggatttaagtgtatgagtaaatgaaattttgatgatctgtgtgtttgacttcattttggttgttttcta |
32026389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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