View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_174 (Length: 251)
Name: NF9595A_low_174
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_174 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 44689757 - 44689980
Alignment:
| Q |
16 |
aataatgcaggtcattttgtaccaaacaaaaaacatgattatacaagtatgctaannnnnnngagttagacatatacctctcacaagggatcagtttaat |
115 |
Q |
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| T |
44689757 |
aataatgcaggtcattttgtaccaaacaaaaaagatgattatacaagtatgctaatttttttgagttagacatatacctctcacaagggatcagtttaat |
44689856 |
T |
|
| Q |
116 |
caggtaaacttaacttatcatggtactaaaaagatgtttccccgacagtgtaatttgtcccaacatttgaaaaatattaatttcttctatccctgatgaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44689857 |
caggtaaacttaacttatcatggtactaaaaagatgtttccccgacagtgtaatttgtcccaacatttgaaaaatattaatttcttctatccctgatgaa |
44689956 |
T |
|
| Q |
216 |
acatcaatctggccaaaatatatt |
239 |
Q |
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||||||||| |||||||||||||| |
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| T |
44689957 |
acatcaatccggccaaaatatatt |
44689980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 44680505 - 44680713
Alignment:
| Q |
27 |
tcattttgtaccaaacaaaaaacatgattatacaagtatgctaannnnnnngagttagacatatacctctcacaagggatcagtttaatcaggtaaactt |
126 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| | |||||||||| ||| ||||||| |||| ||| ||||||||||||||||| |
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| T |
44680505 |
tcattttgtaccaaacaaaaaacttgattatacaagtatgcttattttt--gagttagacacataactctcaccagggctcaatttaatcaggtaaactt |
44680602 |
T |
|
| Q |
127 |
aacttatcatggtactaaaaagatgtttccccgacagtgtaatttgtcccaacatttgaaaaatattaatttcttctatccctgatgaaacatcaatctg |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
44680603 |
aacttatcatggtactaaaaagatgtttccccgacagtgtaatttgtcccaacatttgaaaaatattaatttcttctatccttgatgaaacatcaatgcg |
44680702 |
T |
|
| Q |
227 |
gccaaaatata |
237 |
Q |
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||||||||||| |
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| T |
44680703 |
gccaaaatata |
44680713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 41983801 - 41983632
Alignment:
| Q |
26 |
gtcattttgtaccaaacaaaaaacatgattatacaagtatgctaannnnnnngagttagacatatacctctcacaagggatcagtttaatcaggtaaact |
125 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| || ||||| ||| ||||||| || |||| ||| |||||| || ||| | |
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| T |
41983801 |
gtcattttgtaccaaacaaaaaacttgattatacaagtatgcaaattttta--agttaaacacatacctc--acgagggctcaatttaattagataagca |
41983706 |
T |
|
| Q |
126 |
taacttatcatggtactaaaaagatgtttccccgacagtgtaatttgtcccaacatttgaaaaatattaatttc |
199 |
Q |
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| T |
41983705 |
taacttatcgtggtactaaaaagatatttccccaacagtgtagtttgtcccaacatttgaaaaatattaatttc |
41983632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 9455732 - 9455661
Alignment:
| Q |
130 |
ttatcatggtactaaaaagatgtttccccgacagtgtaatttgtcccaacatttgaaaaatattaatttctt |
201 |
Q |
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||||||||||||||| |||||| ||| || ||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
9455732 |
ttatcatggtactaagaagatgcttctccaacaatgtaatttgtcccaacatttgaaaaatattattttctt |
9455661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 233820 - 233713
Alignment:
| Q |
126 |
taacttatcatggtactaaaaagatgtttccccgacagtgtaatttgtcccaacatttgaaaaatattaatttctt-ctatccctgatgaaacatcaatc |
224 |
Q |
| |
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||||||||| || |||||| |||||| |||||| ||| | |||||| || ||||||| ||||||||||||||||| ||| | ||| ||||||||||| |
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| T |
233820 |
taacttatcttgctactaagaagatgcttccccaacaatttaatttaccctaacattttaaaaatattaatttcttgctacctctgcataaacatcaatc |
233721 |
T |
|
| Q |
225 |
tggccaaa |
232 |
Q |
| |
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|||||||| |
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| T |
233720 |
tggccaaa |
233713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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