View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_182 (Length: 250)
Name: NF9595A_low_182
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_182 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 13959903 - 13960146
Alignment:
| Q |
9 |
aagaatataggataaacaattgagttgatcgattttgagccacaaatatcagnnnnnnngtttatgtcaaacttacaccgatcaagtcgtagtcttagac |
108 |
Q |
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| T |
13959903 |
aagaatataggataaacaattgagttgatcgattttgagccacaaatatcagtttttttgtttatgtcaaacttacaccgatcaagtcatagtcttagac |
13960002 |
T |
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| Q |
109 |
gttacaagaaaaacta--aacttttactttcaatagtcaacgtcaatattaaggtggtttttcatagaattttaaataaatgtgggcgatgttaacctgg |
206 |
Q |
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| T |
13960003 |
gttacaagaaaaactataaacttttactttcaatagtcaacgtcaatattaaggtggtttttcgtagaattttaaataaatgtgggcgatgttaatctgg |
13960102 |
T |
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| Q |
207 |
attgcgacataatgattctttatgctgccaaaatcataacgcga |
250 |
Q |
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| T |
13960103 |
attgcgacataatgattctttatgctgccaaaatcataacgcga |
13960146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 68 - 247
Target Start/End: Original strand, 13971421 - 13971602
Alignment:
| Q |
68 |
gtttatgtcaaacttacaccgatcaagtcgtagtcttagacgttacaagaaaaacta--aacttttactttcaatagtcaacgtcaatattaaggtggtt |
165 |
Q |
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| T |
13971421 |
gtttatgtcaaacttacaccaatcaagtcataatcttagacgttacaagaaaaactataaacttttactttcaatagtcaatgtcaatattaaggttgtc |
13971520 |
T |
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| Q |
166 |
tttcatagaattttaaataaatgtgggcgatgttaacctggattgcgacataatgattctttatgctgccaaaatcataacg |
247 |
Q |
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| T |
13971521 |
tgtcatagaattttaaataaatttgggcgacaattatcaagattgcgacataatgattctttatgttgtcaaaatcataacg |
13971602 |
T |
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