View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_186 (Length: 249)
Name: NF9595A_low_186
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_186 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 14321438 - 14321202
Alignment:
| Q |
1 |
tgtgtcgcctttctaccggtggtaaaagcatcggctacttcccaaccttcttcggttgtcctcttagatgtagtcgacttaaaggtttgtcaagggtcgt |
100 |
Q |
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| T |
14321438 |
tgtgtcgcctttctaccggtggtacaagcatcggctacttcccaaccttcttcggttgtcctcttagatgtcgtcgacttaaaggtttgtcaagggtcgc |
14321339 |
T |
|
| Q |
101 |
gatgcggtgttgtatctagtttatggatggttggtggcaatttgttttaagatctaccgcctccgtgcttgtgggttggtgttttttatattagtcgcgg |
200 |
Q |
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| T |
14321338 |
gatgcggtgttgtatctagtttctggatggttggtgacaatttgttttaagatctaccacctccgtgccggtgggttggtgtttttgatattcgtcgcgg |
14321239 |
T |
|
| Q |
201 |
ttgtttcaggtgccaccggcggactgtgatgagcatc |
237 |
Q |
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| T |
14321238 |
ttgtttaaggtgccaccggcggactatgatgagcatc |
14321202 |
T |
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Back To:
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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 41907708 - 41907831
Alignment:
| Q |
40 |
tcccaaccttcttcggttgtcctcttagatgtagtcgacttaaaggtttgtcaagggtcgtgatgcggtgttgtatctagtttatggatggttggtggca |
139 |
Q |
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||||||| |||| ||||||||||||| |||| || |||| |||||||| ||||||| ||||| ||||||||||| ||||| | |||||||| |||| |
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| T |
41907708 |
tcccaacattctccggttgtcctcttcgatgccgttgactgaaaggttttccaagggttgtgatatggtgttgtatccagtttctagatggttgctggcg |
41907807 |
T |
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| Q |
140 |
atttgttttaagatctaccgcctc |
163 |
Q |
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|| |||||| |||| ||||||||| |
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| T |
41907808 |
atctgttttcagatttaccgcctc |
41907831 |
T |
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