View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_191 (Length: 248)
Name: NF9595A_low_191
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_191 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 37390676 - 37390469
Alignment:
| Q |
13 |
aatattttattttctggaattaattttggccaaattgaagtttgcttaatgattatttggtttaaaaatcaatccacacacagttctaaactgaagcttc |
112 |
Q |
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| T |
37390676 |
aatattttattttctggaattaattttggccaaattgaagtttgcttaatgattatttggtttaaaaatcaatccacacaca-ttctaaactgaagcttc |
37390578 |
T |
|
| Q |
113 |
tttaatagtaagtcaatataacatttgtagctgtaaacataatgttgaaatttattttgagataattcctggatttgactccaaggaccttggtccaaaa |
212 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37390577 |
tttaatagtaagtcaatataacatttgtagcagtaaacataatgttgaaatttattttgagataattcctggatttgactccaaggaccttggtccaaaa |
37390478 |
T |
|
| Q |
213 |
tgaatttta |
221 |
Q |
| |
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||||||||| |
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| T |
37390477 |
tgaatttta |
37390469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 37381811 - 37381603
Alignment:
| Q |
13 |
aatattttattttctggaattaattttggccaaattgaagtttgcttaatgattatttggtttaaaaatcaatccacacacagttctaaactgaagcttc |
112 |
Q |
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||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||| || ||||||| |||||||||||| ||||||||||||||||||| |
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| T |
37381811 |
aatattttattttttggaattaagtttggccaaattgaagcttgcttaatgattatgtgttttaaaattcaatccacacatagttctaaactgaagcttc |
37381712 |
T |
|
| Q |
113 |
tttaatagtaagtcaatataacatttgtagctgtaaacataatgttgaaatttattttgagataattcctggatttgactccaaggaccttggtccaaaa |
212 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37381711 |
tttaatagtaagtcaaaataacatttgtagcagtaaacataatgttgaaatctaaattgagataattcctggatttgacttcaaggaccttggtccaaaa |
37381612 |
T |
|
| Q |
213 |
tgaatttta |
221 |
Q |
| |
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||||||||| |
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| T |
37381611 |
tgaatttta |
37381603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 37359614 - 37359411
Alignment:
| Q |
13 |
aatattttattttctggaattaattttggccaaattgaagtttgcttaatgattatttggtttaaaaatcaatccacacacagttctaaactgaagcttc |
112 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| |||||||||| |||| | ||||||||||| | |||||| |||||| | ||||||| |
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| T |
37359614 |
aatattttattttctggaattaattctaaccaaattgaagcttgcttaatgcttatgagatttaaaaatcatttcacaca--gttctacgccgaagctta |
37359517 |
T |
|
| Q |
113 |
tttaatagtaagtcaatataacatttgtagctgtaaacataatgttgaaatttattttgagataattcctggatttgactccaaggaccttggtccaaaa |
212 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||||||||||||| ||| || |||||||| |||||||| |||||||| ||||||||||||| |
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| T |
37359516 |
tttaata---agtcaaaataacatttgtagcaataaacataatgttgaaatatatatttagataatttttggatttggctccaaggtccttggtccaaaa |
37359420 |
T |
|
| Q |
213 |
tgaatttta |
221 |
Q |
| |
|
||||||||| |
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|
| T |
37359419 |
tgaatttta |
37359411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 37368450 - 37368653
Alignment:
| Q |
13 |
aatattttattttctggaattaattttggccaaattgaagtttgcttaatgattatttggtttaaaaatcaatccacacacagttctaaactgaagcttc |
112 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||| |||||||||| |||| | ||||||||||| | |||||| |||||| | ||||||| |
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| T |
37368450 |
aatattttattttctggaattaattctaaccaaattgaagcttgcttaatgcttatgagatttaaaaatcatttcacaca--gttctacgccgaagctta |
37368547 |
T |
|
| Q |
113 |
tttaatagtaagtcaatataacatttgtagctgtaaacataatgttgaaatttattttgagataattcctggatttgactccaaggaccttggtccaaaa |
212 |
Q |
| |
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||||||| |||||| |||||||||||||| |||||||||||||||||| ||| || |||||||| |||||||| |||||||| ||||||||||||| |
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| T |
37368548 |
tttaata---agtcaaaataacatttgtagcaataaacataatgttgaaatatatatttagataatttttggatttggctccaaggtccttggtccaaaa |
37368644 |
T |
|
| Q |
213 |
tgaatttta |
221 |
Q |
| |
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||||||||| |
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|
| T |
37368645 |
tgaatttta |
37368653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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