View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_194 (Length: 247)

Name: NF9595A_low_194
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_194
NF9595A_low_194
[»] chr1 (1 HSPs)
chr1 (1-235)||(36314428-36314665)
[»] chr8 (21 HSPs)
chr8 (34-158)||(19345334-19345458)
chr8 (34-158)||(19503885-19504009)
chr8 (34-146)||(19337681-19337793)
chr8 (34-133)||(19355714-19355813)
chr8 (34-157)||(19468410-19468533)
chr8 (34-157)||(19555331-19555454)
chr8 (31-145)||(19410958-19411072)
chr8 (31-145)||(19457977-19458091)
chr8 (31-145)||(19522987-19523101)
chr8 (52-157)||(19404923-19405028)
chr8 (54-151)||(19376801-19376898)
chr8 (34-145)||(19592308-19592416)
chr8 (31-145)||(19469355-19469466)
chr8 (31-145)||(19540279-19540390)
chr8 (60-235)||(19390686-19390864)
chr8 (60-142)||(19172660-19172742)
chr8 (47-145)||(19287901-19287999)
chr8 (76-123)||(19371145-19371192)
chr8 (185-235)||(19410883-19410933)
chr8 (185-235)||(19457902-19457952)
chr8 (185-235)||(19523126-19523176)
[»] chr6 (1 HSPs)
chr6 (61-157)||(19543241-19543337)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 36314428 - 36314665
Alignment:
Q  1 tccattcatatgatgatgcattgtccattttgctt---ggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctccca 97  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314428 tccattcatatgatgatgcattgtccattttgctttttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctccca 36314527  T
Q  98 tttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccactagcattgtcttcatcaccacttgttaacttgcccttc 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36314528 tttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccactagcattgtcttcaacaccacttgttaacttgcccttc 36314627  T
Q  198 gaggatagctcccatcgtataaacttcccatctttaac 235  Q
    |||||||||||||||| |||||||||||||||||||||    
T  36314628 gaggatagctcccatcatataaacttcccatctttaac 36314665  T

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Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 19345458 - 19345334
Alignment:
Q  34 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 133  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19345458 ttggtgttcccaccattttctgaaaaacctcaccattttccctacaatttggtatttcctcccatttttggcaccctccattgctattatatccataaca 19345359  T
Q  134 tatatctgcatttccaatttctcca 158  Q
     ||||||||||| ||||| ||||||    
T  19345358 catatctgcattcccaatatctcca 19345334  T

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Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 19503885 - 19504009
Alignment:
Q  34 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 133  Q
    ||||||||||| |  ||||||||||||||||||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19503885 ttggtgttcccgcaattttctgaaaaacctcaccattttccctacaatttggtatttcctcccatttttggcaccctccattgctattatatccataaca 19503984  T
Q  134 tatatctgcatttccaatttctcca 158  Q
     ||||||||||| ||||| ||||||    
T  19503985 catatctgcattcccaatctctcca 19504009  T

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Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 19337793 - 19337681
Alignment:
Q  34 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 133  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19337793 ttggtcttcccaccattttccgaaaaacctcaccaggttccctacaatttggtatttcctcccatttttggcaccctccatcgctattatatccataaca 19337694  T
Q  134 tatatctgcattt 146  Q
     || |||||||||    
T  19337693 catgtctgcattt 19337681  T

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Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 19355813 - 19355714
Alignment:
Q  34 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 133  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19355813 ttggtcttcccacctttttccgaaaaacctcaccaggttccctacaatttggtatttcctcccatttttggcaccctccatcgctattatatccataaca 19355714  T

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Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 19468410 - 19468533
Alignment:
Q  34 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 133  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  19468410 ttggtcttcccgcctttttctgaaacccctcaccaggtgccctacaagttggtatatcctcccatttttggcatcctccatcactattatatccataaca 19468509  T
Q  134 tatatctgcatttccaatttctcc 157  Q
     |||||||||||| |||| |||||    
T  19468510 catatctgcatttacaatatctcc 19468533  T

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Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 19555331 - 19555454
Alignment:
Q  34 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 133  Q
    ||||| ||||| |||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||    
T  19555331 ttggtcttcccgcctttttctgaaacccctcaccaggtgccctacaagttggtatatcctcccatttttggcatcctccatcactattatatccataaca 19555430  T
Q  134 tatatctgcatttccaatttctcc 157  Q
     |||||||||||| |||| |||||    
T  19555431 catatctgcatttacaatatctcc 19555454  T

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Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 19411072 - 19410958
Alignment:
Q  31 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 130  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19411072 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19410973  T
Q  131 acatatatctgcatt 145  Q
    ||| |||||||||||    
T  19410972 acacatatctgcatt 19410958  T

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Target: chr8; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 19458091 - 19457977
Alignment:
Q  31 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 130  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19458091 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19457992  T
Q  131 acatatatctgcatt 145  Q
    ||| |||||||||||    
T  19457991 acacatatctgcatt 19457977  T

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Target: chr8; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 19522987 - 19523101
Alignment:
Q  31 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 130  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||    
T  19522987 tgcttggtcttcccgcctttttctgaaacatctcaccaggttccctgcaagttggtatatcctcccatttttggcaccctccatcactattatatccgta 19523086  T
Q  131 acatatatctgcatt 145  Q
    ||| |||||||||||    
T  19523087 acacatatctgcatt 19523101  T

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Target: chr8; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 52 - 157
Target Start/End: Complemental strand, 19405028 - 19404923
Alignment:
Q  52 tctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaat 151  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||| |||||||||||||||||    
T  19405028 tctgaaacacctcaccaggttccctacaagttggtatatcctcccacttttggcaccctccgtccctattatatccataacacatatctgcatttccaat 19404929  T
Q  152 ttctcc 157  Q
     |||||    
T  19404928 atctcc 19404923  T

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Target: chr8; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 19376898 - 19376801
Alignment:
Q  54 tgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaat 151  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||    
T  19376898 tgaaacacctcaccaggttccctgcaagctggtatatcctcccatttttggcaccctcgatcactattatatccataacatatatctgcatttccaat 19376801  T

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Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 19592416 - 19592308
Alignment:
Q  34 ttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataaca 133  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    | ||||||| |||||    
T  19592416 ttggtgttcccgcctttttctgaaaaacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccat---cactatatccgtaaca 19592320  T
Q  134 tatatctgcatt 145  Q
     |||||||||||    
T  19592319 catatctgcatt 19592308  T

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Target: chr8; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 19469355 - 19469466
Alignment:
Q  31 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 130  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    | ||||||| ||    
T  19469355 tgcttggtcttcccgcctttttctgaaacacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccat---cactatatccgta 19469451  T
Q  131 acatatatctgcatt 145  Q
    ||| |||||||||||    
T  19469452 acacatatctgcatt 19469466  T

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Target: chr8; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 19540279 - 19540390
Alignment:
Q  31 tgcttggtgttcccacctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccata 130  Q
    |||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    | ||||||| ||    
T  19540279 tgcttggtcttcccgcctttttctgaaacacctcaccaggttccctgcaagttggtatatcctcccatttttggcatcctccat---cactatatccgta 19540375  T
Q  131 acatatatctgcatt 145  Q
    ||| |||||||||||    
T  19540376 acacatatctgcatt 19540390  T

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Target: chr8; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 60 - 235
Target Start/End: Complemental strand, 19390864 - 19390686
Alignment:
Q  60 acctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctccac 159  Q
    ||||||| ||| ||||| ||||||||||||||||||||||||||||||||  |||  |||||||||||||||||  ||||||||||  |||| ||| |||    
T  19390864 acctcacgagggtccctgcaagttggtatatcctcccatttttggcacccggcatcactattatatccataacacttatctgcattagcaatgtctgcac 19390765  T
Q  160 tagcattgtct---tcatcaccacttgttaacttgcccttcgaggatagctcccatcgtataaacttcccatctttaac 235  Q
    ||  | | |||   |||||| ||||| ||||| | ||||||||||  |    |||||||||||||||||||||||||||    
T  19390764 tataaatctctccctcatcagcacttattaacctccccttcgaggtaatgaaccatcgtataaacttcccatctttaac 19390686  T

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Target: chr8; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 19172660 - 19172742
Alignment:
Q  60 acctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgc 142  Q
    |||||||| |||||||| || |||||||||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||    
T  19172660 acctcaccgggttccctgcaggttggtatatcctcccatttttggcaccctccatcggtattatagccataacacatatctgc 19172742  T

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Target: chr8; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 19287999 - 19287901
Alignment:
Q  47 ctttttctgaaaaacctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatt 145  Q
    |||||| ||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||||| |||   ||||||||||||||||  ||||||||||    
T  19287999 ctttttttgaaagacctcaccacgttccctgcaagttggcatatcctcccatttttggcacccttcatcattattatatccataacacttatctgcatt 19287901  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 19371192 - 19371145
Alignment:
Q  76 tacaagttggtatatcctcccatttttggcaccctccattgctattat 123  Q
    ||||||||||||||| ||||||||||||||| || ||||| |||||||    
T  19371192 tacaagttggtatatactcccatttttggcatccaccattactattat 19371145  T

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Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 19410933 - 19410883
Alignment:
Q  185 taacttgcccttcgaggatagctcccatcgtataaacttcccatctttaac 235  Q
    |||||| |||||||||||||| |||||| ||  ||||||||||||||||||    
T  19410933 taacttccccttcgaggatagttcccattgtgcaaacttcccatctttaac 19410883  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 19457952 - 19457902
Alignment:
Q  185 taacttgcccttcgaggatagctcccatcgtataaacttcccatctttaac 235  Q
    |||||| |||||||||||||| |||||| ||  ||||||||||||||||||    
T  19457952 taacttccccttcgaggatagttcccattgtgcaaacttcccatctttaac 19457902  T

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Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 19523126 - 19523176
Alignment:
Q  185 taacttgcccttcgaggatagctcccatcgtataaacttcccatctttaac 235  Q
    |||||| |||||||||||||| |||||| ||  ||||||||||||||||||    
T  19523126 taacttccccttcgaggatagttcccattgtgcaaacttcccatctttaac 19523176  T

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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 157
Target Start/End: Complemental strand, 19543337 - 19543241
Alignment:
Q  61 cctcaccaggttccctacaagttggtatatcctcccatttttggcaccctccattgctattatatccataacatatatctgcatttccaatttctcc 157  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| |  |||||||||||||| |||||    
T  19543337 cctcaccaggttccctacaacttggtatatcctcccatttttggcaccctccgttgatattatatccataacacaagtctgcatttccaatatctcc 19543241  T

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