View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9595A_low_20 (Length: 444)
Name: NF9595A_low_20
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 4 - 432
Target Start/End: Complemental strand, 12287634 - 12287209
Alignment:
| Q |
4 |
tcacctcgaacaacaacatatgcatcctcagttacatgaatatcttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtataga |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12287634 |
tcacctcgaacaacaacatatgcatcctcaattacatgaatattttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtataga |
12287535 |
T |
|
| Q |
104 |
atttaatagtgttgtgcacaaatgtgtgttagtactttaagaatgaatgtatattgctatgttcttcaatcttgttttgatggaattgaggtgttatgta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12287534 |
atttaatagtgttgtgcacaaatgtgtgttagtactttaagaatgattgtatattgctatgttcttcaatcttgttttgatggaattgaggtgttatgta |
12287435 |
T |
|
| Q |
204 |
ataagttgtgtgaatatataataagcttaagtttagagattttgatttggaaagtgaggagaaagtgggaaagaaaggaagagtgtaattggtttgtagt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
12287434 |
ataagttgtgtgaatatataataagcttaagtttagagattttgatttggaaagtgacgagaaagagggaaagaaag--agagtgtaattggtgtgtagt |
12287337 |
T |
|
| Q |
304 |
ttcagtgtatttgaaatttggtttgaaaaagcaaaatatacattttcgttgatgactttgtctttgtataacttgcggcacaaaacaattccttggatat |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12287336 |
ttcagtgtatttgaaatttggtttgaaaaagc-aaatatacgttttcgttgatgactttgactttgtataacttgcagcacaaaacaattccttggatat |
12287238 |
T |
|
| Q |
404 |
atccgctaatacgctgtttggttgatatt |
432 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
12287237 |
atccgctaatacgctgtttggttgatatt |
12287209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 4 - 372
Target Start/End: Complemental strand, 12267055 - 12266684
Alignment:
| Q |
4 |
tcacctcgaacaacaacatatgcatcctcagttacatgaatatcttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtataga |
103 |
Q |
| |
|
||||||||||| ||||| |||||||| || ||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||||||| ||| ||| |
|
|
| T |
12267055 |
tcacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccgtgatttctaatgtgcgtgaggctacacccatagtagaga |
12266956 |
T |
|
| Q |
104 |
atttaatagt-gttgtgcacaaatgtg--tgttag-tactttaagaatgaatgtatattgctatgttcttcaatcttgttttgatggaattgaggtgtta |
199 |
Q |
| |
|
||||||| | |||||| | ||| | |||||| | | |||||||||||| |||||| ||||| |||||| || || ||| |||||||||||||| |
|
|
| T |
12266955 |
atttaatgttagttgtgaataaaacttcctgttagctggtgtaagaatgaatggatattgttatgtccttcaagtttattgtgagtgaattgaggtgtta |
12266856 |
T |
|
| Q |
200 |
tgtaataagttgtgtgaatatataataagcttaagtttagagattttgatttggaaagtgaggagaaagtgggaaagaaaggaagagtgtaattggtttg |
299 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||| || | ||||||||| |||||||||| ||||||| |||| ||||| | |||||||||||||||| |
|
|
| T |
12266855 |
tgttataagttgtgtaaatatataataagcttaaggtttgggattttgatatggaaagtgatgagaaagagggagagaaa-tacgagtgtaattggtttg |
12266757 |
T |
|
| Q |
300 |
tagtttcagtgtatttgaaatttggtttgaaaaagcaaaatatacattttcgttgatgactttgtctttgtat |
372 |
Q |
| |
|
| |||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
12266756 |
tggtttcaatgtaattgaaatttggtttgaaaaagcaaaatatacgttttcgttgaagactttgactttgtat |
12266684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 4 - 372
Target Start/End: Complemental strand, 12282781 - 12282410
Alignment:
| Q |
4 |
tcacctcgaacaacaacatatgcatcctcagttacatgaatatcttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtataga |
103 |
Q |
| |
|
||||||||||| ||||| |||||||| || ||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||||||| ||| ||| |
|
|
| T |
12282781 |
tcacctcgaacgacaacgtatgcatcttcggttacatgaatattttcgccggatataaccgtgatttctaatgtgcgtgaggctacacccatagtagaga |
12282682 |
T |
|
| Q |
104 |
atttaatagt-gttgtgcacaaatgtg--tgttag-tactttaagaatgaatgtatattgctatgttcttcaatcttgttttgatggaattgaggtgtta |
199 |
Q |
| |
|
||||||| | |||||| | ||| | |||||| | | |||||||||||| |||||| ||||| |||||| || || ||| |||||||||||||| |
|
|
| T |
12282681 |
atttaatgttagttgtgaataaaacttcctgttagctggtgtaagaatgaatggatattgttatgtccttcaagtttattgtgagtgaattgaggtgtta |
12282582 |
T |
|
| Q |
200 |
tgtaataagttgtgtgaatatataataagcttaagtttagagattttgatttggaaagtgaggagaaagtgggaaagaaaggaagagtgtaattggtttg |
299 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| || | ||||||||| |||||||||| ||||||| |||| ||||| | |||||||||||||||| |
|
|
| T |
12282581 |
tgttataagttgtgtgaatatataataaggttaaggtttgggattttgatatggaaagtgatgagaaagagggagagaaa-tacgagtgtaattggtttg |
12282483 |
T |
|
| Q |
300 |
tagtttcagtgtatttgaaatttggtttgaaaaagcaaaatatacattttcgttgatgactttgtctttgtat |
372 |
Q |
| |
|
| |||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
12282482 |
tggtttcaatgtaattgaaatttggtttgaaaaagcaaaatatacgttttcgttgaagactttgactttgtat |
12282410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 12256964 - 12256885
Alignment:
| Q |
4 |
tcacctcgaacaacaacatatgcatcctcagttacatgaatatcttccccggatataaccgttatttctaatgtatgtga |
83 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||| ||| || ||||||||||| ||||||||||| ||||| |
|
|
| T |
12256964 |
tcacctcgaacaacaacgtatgcatcctccgttacatgaatattttcaccagatataaccgtaatttctaatgtttgtga |
12256885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 12264356 - 12264277
Alignment:
| Q |
4 |
tcacctcgaacaacaacatatgcatcctcagttacatgaatatcttccccggatataaccgttatttctaatgtatgtga |
83 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||| ||| || ||||||||||| ||||||||||| ||||| |
|
|
| T |
12264356 |
tcacctcgaacaacaacgtatgcatcctccgttacatgaatattttcaccagatataaccgtaatttctaatgtttgtga |
12264277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 12270968 - 12270889
Alignment:
| Q |
4 |
tcacctcgaacaacaacatatgcatcctcagttacatgaatatcttccccggatataaccgttatttctaatgtatgtga |
83 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||| ||| || ||||||| ||| ||||||||||| ||||| |
|
|
| T |
12270968 |
tcacctcgaacaacaacgtatgcatcctctgttacatgaatattttctccagatataatcgtaatttctaatgtttgtga |
12270889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 337
Target Start/End: Complemental strand, 12270734 - 12270659
Alignment:
| Q |
262 |
gagaaagtgggaaagaaaggaagagtgtaattggtttgtagtttcagtgtatttgaaatttggtttgaaaaagcaa |
337 |
Q |
| |
|
||||||| ||| ||||||| |||||||||||||||| || | |||| |||||||||| | || |||| |||||||| |
|
|
| T |
12270734 |
gagaaagaggggaagaaagaaagagtgtaattggttggttggttcaatgtatttgaattatgatttggaaaagcaa |
12270659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 158
Target Start/End: Complemental strand, 29197690 - 29197535
Alignment:
| Q |
4 |
tcacctcgaacaacaacatatgcatcctcagttacatgaatatcttccccggatataaccgttatttctaatgtatgtgaggctacacccatcgtataga |
103 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| |||||||| ||| |||| |||||| |||||||||||||| |||| |||| |||||| ||| | | |
|
|
| T |
29197690 |
tcacctcgaacgacaacgtatgcatcctcagttatatgaatattttcaccggttataactgttatttctaatgtgcgtgaagctatacccatagtagaaa |
29197591 |
T |
|
| Q |
104 |
atttaatagtgttgtgcacaaatgtgtgttagtacttt-aagaatgaatgtatatt |
158 |
Q |
| |
|
|||| || |||||||||||| ||||| ||||||| |||||||||| |||||| |
|
|
| T |
29197590 |
atttgatgttgttgtgcacaagaatgtgtgtgtactttaaagaatgaatatatatt |
29197535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 29197546 - 29197446
Alignment:
| Q |
214 |
tgaatatataataagcttaagtttagagattttgatttggaaagtgaggagaaagtgggaaagaaaggaagagtgtaattggtttgtagtttcagtgtat |
313 |
Q |
| |
|
|||||||||| ||||||||||||| | | ||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
29197546 |
tgaatatatattaagcttaagttttggg-ttttgatatggaaagtggtgagaaagagggaaagaaagaaagagtgtaattggtttgttgtttcggtgtat |
29197448 |
T |
|
| Q |
314 |
tt |
315 |
Q |
| |
|
|| |
|
|
| T |
29197447 |
tt |
29197446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 430
Target Start/End: Complemental strand, 29197413 - 29197351
Alignment:
| Q |
368 |
tgtataacttgcggcacaaaacaattccttggatatatccgctaatacgctgtttggttgata |
430 |
Q |
| |
|
||||| |||||| |||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29197413 |
tgtattacttgcagcacaagacaattccgtggatatatccgctaatacgctgtttggttgata |
29197351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University