View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_200 (Length: 246)

Name: NF9595A_low_200
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_200
NF9595A_low_200
[»] chr3 (11 HSPs)
chr3 (14-234)||(3472913-3473132)
chr3 (17-234)||(18539221-18539439)
chr3 (102-234)||(3586037-3586169)
chr3 (17-148)||(39728849-39728979)
chr3 (14-145)||(18694761-18694891)
chr3 (14-145)||(18710280-18710410)
chr3 (140-234)||(39728207-39728300)
chr3 (108-193)||(15778350-15778435)
chr3 (19-119)||(19595713-19595813)
chr3 (65-145)||(3289496-3289575)
chr3 (189-231)||(3475798-3475840)
[»] scaffold0281 (1 HSPs)
scaffold0281 (14-234)||(561-781)
[»] chr4 (15 HSPs)
chr4 (17-234)||(11150311-11150527)
chr4 (19-231)||(25127291-25127503)
chr4 (14-234)||(15703423-15703642)
chr4 (17-234)||(23972830-23973047)
chr4 (17-234)||(14644608-14644824)
chr4 (14-233)||(4529772-4529989)
chr4 (106-231)||(19612930-19613056)
chr4 (18-145)||(18875038-18875161)
chr4 (94-151)||(20770653-20770710)
chr4 (129-222)||(12385288-12385382)
chr4 (120-174)||(25267238-25267291)
chr4 (195-232)||(9565036-9565073)
chr4 (105-145)||(15691335-15691376)
chr4 (123-187)||(34644891-34644956)
chr4 (101-145)||(9609818-9609862)
[»] chr7 (11 HSPs)
chr7 (17-234)||(11509747-11509963)
chr7 (17-234)||(18148735-18148951)
chr7 (17-231)||(22530124-22530338)
chr7 (17-234)||(34705766-34705977)
chr7 (14-193)||(21860584-21860761)
chr7 (33-138)||(13694170-13694274)
chr7 (87-159)||(3377724-3377797)
chr7 (117-193)||(21501014-21501091)
chr7 (120-176)||(6019275-6019331)
chr7 (123-174)||(13386703-13386753)
chr7 (123-172)||(19193976-19194024)
[»] chr1 (10 HSPs)
chr1 (17-232)||(52272638-52272852)
chr1 (61-232)||(12785022-12785199)
chr1 (106-232)||(41138001-41138127)
chr1 (106-231)||(23633272-23633398)
chr1 (106-234)||(9132518-9132647)
chr1 (34-145)||(89878-89988)
chr1 (14-111)||(18514938-18515036)
chr1 (61-145)||(18249887-18249972)
chr1 (110-161)||(19474425-19474476)
chr1 (14-53)||(18249965-18250004)
[»] chr8 (7 HSPs)
chr8 (17-234)||(9882232-9882449)
chr8 (8-232)||(40387489-40387712)
chr8 (111-234)||(1216744-1216867)
chr8 (62-234)||(42145381-42145553)
chr8 (106-145)||(17289632-17289671)
chr8 (17-71)||(4860588-4860638)
chr8 (14-94)||(42145299-42145378)
[»] chr5 (6 HSPs)
chr5 (16-234)||(39437069-39437286)
chr5 (109-182)||(29497057-29497130)
chr5 (123-172)||(27273153-27273201)
chr5 (123-170)||(19049409-19049455)
chr5 (106-137)||(32039818-32039849)
chr5 (197-234)||(29497018-29497055)
[»] chr6 (9 HSPs)
chr6 (61-234)||(19770140-19770312)
chr6 (17-234)||(19891695-19891909)
chr6 (17-227)||(9547622-9547831)
chr6 (100-234)||(22468810-22468951)
chr6 (124-193)||(12876106-12876176)
chr6 (106-145)||(19565277-19565316)
chr6 (106-145)||(20738946-20738985)
chr6 (14-68)||(22468752-22468806)
chr6 (122-159)||(17729507-17729544)
[»] scaffold0024 (1 HSPs)
scaffold0024 (18-230)||(106674-106885)
[»] scaffold0005 (1 HSPs)
scaffold0005 (17-234)||(172468-172684)
[»] scaffold0323 (1 HSPs)
scaffold0323 (99-231)||(15300-15432)
[»] chr2 (11 HSPs)
chr2 (106-232)||(20264687-20264813)
chr2 (106-234)||(16092412-16092541)
chr2 (14-145)||(32625541-32625671)
chr2 (22-136)||(34892182-34892295)
chr2 (106-193)||(38991701-38991788)
chr2 (118-232)||(27401699-27401814)
chr2 (61-138)||(20178635-20178711)
chr2 (106-193)||(22385814-22385899)
chr2 (116-159)||(29890519-29890563)
chr2 (117-161)||(30613283-30613327)
chr2 (14-84)||(16092227-16092297)
[»] scaffold0498 (2 HSPs)
scaffold0498 (17-145)||(12012-12139)
scaffold0498 (141-231)||(9784-9875)
[»] scaffold0009 (1 HSPs)
scaffold0009 (86-145)||(221835-221894)
[»] scaffold0449 (1 HSPs)
scaffold0449 (151-226)||(353-429)
[»] scaffold0043 (2 HSPs)
scaffold0043 (106-161)||(66695-66752)
scaffold0043 (16-84)||(66953-67021)
[»] scaffold0196 (1 HSPs)
scaffold0196 (117-145)||(22871-22899)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 3473132 - 3472913
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 113  Q
    ||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| |||||| |||||||| | |||||||| ||||||||    
T  3473132 acatcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacatatcttc-aaatagacctacagttatgtatgcaatg 3473034  T
Q  114 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaatcggactg 213  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3473033 tctctaactcgactctatatgcatgttgtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactg 3472934  T
Q  214 accatgaatgcatgaacacca 234  Q
    |||||||||||||||||||||    
T  3472933 accatgaatgcatgaacacca 3472913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 18539439 - 18539221
Alignment:
Q  17 tcattgaatatcacatctttaaa-taattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtc 115  Q
    |||||||||||| |||||||||| || ||||| |||||||| ||| ||||||||||||||||||||||| ||||| || | |||||||| ||||||||||    
T  18539439 tcattgaatatcgcatctttaaaatagttacagatcttaaagtattacatcttttaattacacatcttc-aaatatacctacagttatgtatgcaatgtc 18539341  T
Q  116 cctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaaatcggactga 214  Q
     ||||||||||||||||||||||||||||||||||||||| | ||| |||| |||| |||||||| |||||||||||| ||||| |||||||||||||||    
T  18539340 tctaactcgactctatatgcatgtggtaccggttttggattttagagttatcttactgatttatctcccatctttaaatcacatatttaaatcggactga 18539241  T
Q  215 ccatgaatgcatgaacacca 234  Q
     |||||||||||||||||||    
T  18539240 acatgaatgcatgaacacca 18539221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 3586037 - 3586169
Alignment:
Q  102 atggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctt 201  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||| |||| ||| | ||||||||||||||||||    
T  3586037 atggatgcaatgtccctaactcgactctatatgcatgtagtaccgattttggatatcagagttatgttactgattaatctcgcatctttaaacacatctt 3586136  T
Q  202 taaatcggactgaccatgaatgcatgaacacca 234  Q
    |||||||||||||||||||||||||||||||||    
T  3586137 taaatcggactgaccatgaatgcatgaacacca 3586169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 39728979 - 39728849
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||||| |||||||| | || ||||| ||||||||||     
T  39728979 tcattgaatatcacatctttaaatacgtacacatcttaaaatatcacttcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtct 39728881  T
Q  117 ctaactcgactctatatgcatgtggtaccggt 148  Q
    ||||||||||||||||||||||||||||||||    
T  39728880 ctaactcgactctatatgcatgtggtaccggt 39728849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 18694891 - 18694761
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 113  Q
    |||||||||||||||||||||||| ||| |||||  |||| || |  |||||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  18694891 acatcattgaatatcacatctttacatatttacatgtctttaaatcacacatcttttaattacacatcttt-aagtagacttgcagttatgtatgcaatg 18694793  T
Q  114 tccctaactcgactctatatgcatgtggtacc 145  Q
    ||||||||||||||||||||||||||||||||    
T  18694792 tccctaactcgactctatatgcatgtggtacc 18694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 18710410 - 18710280
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 113  Q
    |||||||||||||||||||||||| ||| |||||  |||| || |  |||||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  18710410 acatcattgaatatcacatctttacatatttacatgtctttaaatcacacatcttttaattacacatcttt-aagtagacttgcagttatgtatgcaatg 18710312  T
Q  114 tccctaactcgactctatatgcatgtggtacc 145  Q
    ||||||||||||||||||||||||||||||||    
T  18710311 tccctaactcgactctatatgcatgtggtacc 18710280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 140 - 234
Target Start/End: Complemental strand, 39728300 - 39728207
Alignment:
Q  140 ggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacacca 234  Q
    |||||||||||||||||||||| |||||  || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39728300 ggtaccggttttggatatcagagttatga-actggtttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacacca 39728207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 193
Target Start/End: Complemental strand, 15778435 - 15778350
Alignment:
Q  108 gcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa 193  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||||||||||||    
T  15778435 gcaatgtccctaactcgactctatatgcatgtggtactgattttggatatcagagttatgttactgatttatcccccatctttaaa 15778350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 19595713 - 19595813
Alignment:
Q  19 attgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccct 118  Q
    |||||||||| |||||||||||| ||| |||| || || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  19595713 attgaatatcccatctttaaatagttatacatttttaaatatcacatcttttaattacacatcttcaaaatagacttgcagttatgtatgcaatgtccct 19595812  T
Q  119 a 119  Q
    |    
T  19595813 a 19595813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 3289496 - 3289575
Alignment:
Q  65 tcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtacc 145  Q
    ||||| ||| |||||||||| ||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||    
T  3289496 tctttaaatcacacatcttc-aaatagacttgtagttatgtatgcaatgtctctaactcgactctatatgcatgtggtacc 3289575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 3475798 - 3475840
Alignment:
Q  189 ttaaacacatctttaaatcggactgaccatgaatgcatgaaca 231  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  3475798 ttaaacacatctttaaatcggactgaccaagaatgcatgaaca 3475840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 561 - 781
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 113  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||| |||||||| |||||||||| ||||||||    
T  561 acatcattgaatatcacatctttaaatatttacacatcttaaaatatcacatcttttaattatgcatcttc-aaatagacctgcagttatgtatgcaatg 659  T
Q  114 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaaatcggact 212  Q
    || |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  660 tctctaactcgactctatatgcatgtggtaccggttttggatatcagagatatgttactgatttatcccccatctttaaatcacatctttaaatcggact 759  T
Q  213 gaccatgaatgcatgaacacca 234  Q
    ||||||||||||||||||||||    
T  760 gaccatgaatgcatgaacacca 781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 11150311 - 11150527
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  11150311 tcattgaatatcacatatttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 11150409  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaatcggactgacc 216  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11150410 ctaactcgactctatatgcatgttgtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 11150509  T
Q  217 atgaatgcatgaacacca 234  Q
    ||||||||||||||||||    
T  11150510 atgaatgcatgaacacca 11150527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 25127503 - 25127291
Alignment:
Q  19 attgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccct 118  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| ||    
T  25127503 attgaatatcacatctttaaatagttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctct 25127405  T
Q  119 aactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaaatcggactgacca 217  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  25127404 aactcgactcaatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccccatctttaaatcacatctttaaatcggactgacca 25127305  T
Q  218 tgaatgcatgaaca 231  Q
    ||||||||||||||    
T  25127304 tgaatgcatgaaca 25127291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 15703423 - 15703642
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 113  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | || ||||| ||||||||    
T  15703423 acatcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatg 15703521  T
Q  114 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaatcggactg 213  Q
    || ||||||||||||||||| |||||||||||| |||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15703522 tctctaactcgactctatatacatgtggtaccgattttagatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactg 15703621  T
Q  214 accatgaatgcatgaacacca 234  Q
    |||||||||||||||||||||    
T  15703622 accatgaatgcatgaacacca 15703642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 23972830 - 23973047
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||     
T  23972830 tcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaatcacacatcttc-aaatagacctacagttatgtatgcaatgtct 23972928  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaaatcggactgac 215  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| || |||||||||||||||||| ||||||||||||||||||||||    
T  23972929 ctaactcgactctatatgcatgtggtaccagttttggatatcagagttatgttactgaattatcccccatctttaaatcacatctttaaatcggactgac 23973028  T
Q  216 catgaatgcatgaacacca 234  Q
    |||||||||||||||||||    
T  23973029 catgaatgcatgaacacca 23973047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 14644608 - 14644824
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    ||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||| | ||| |||||||| |  | ||||| ||| ||||||     
T  14644608 tcattgagtatcacatctttaaatagttacatatcgtaaaatatcacatcttttaattacaccttttc-aaatagacctataattatgtatgtaatgtct 14644706  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaatcggactgacc 216  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14644707 ctaactcgactctatatgcatgtgatatcggttttggatatcatagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 14644806  T
Q  217 atgaatgcatgaacacca 234  Q
    ||||||||||||||||||    
T  14644807 atgaatgcatgaacacca 14644824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 233
Target Start/End: Original strand, 4529772 - 4529989
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 113  Q
    |||||||||||||||||||||||||||| ||||| || || || || || ||  ||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  4529772 acatcattgaatatcacatctttaaatagttacatatttttaaataacaaattatttaattacacatcttc-aaatagacttgtagttatgtatgcaatg 4529870  T
Q  114 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaatcggactg 213  Q
    || |||||||| |||||||||||||||||| |  ||||||||||||||  |||||||| ||||||| ||||||||| || ||||| |||||||| |||||    
T  4529871 tctctaactcggctctatatgcatgtggtaacatttttggatatcagaggtatgttactgatttat-ccccatcttaaatcacatatttaaatcagactg 4529969  T
Q  214 accatgaatgcatgaacacc 233  Q
    |||||||||||||| |||||    
T  4529970 accatgaatgcatggacacc 4529989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 19613056 - 19612930
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaa 204  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||| |||| ||||||||||| |||||||||||    
T  19613056 atgcaatgtccctaactcgactctatatgcatgtggtactggtttcggatatcagagttatgttactgattaatcctccatctttaaatcacatctttaa 19612957  T
Q  205 atcggactgaccatgaatgcatgaaca 231  Q
    |||||||||||||||||||||||||||    
T  19612956 atcggactgaccatgaatgcatgaaca 19612930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 18875038 - 18875161
Alignment:
Q  18 cattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccc 117  Q
    |||| |||||| |||||||||||| ||||||||||| ||  |  ||||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||||    
T  18875038 cattaaatatctcatctttaaatagttacacatctttaaaaagaacatcttttaattacacatattc-atatagacttgcaattatgtatgcaatgtccc 18875136  T
Q  118 taactcgactctatatgcatgtggtacc 145  Q
    |||||||| ||||||  |||||||||||    
T  18875137 taactcga-tctata--catgtggtacc 18875161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 20770653 - 20770710
Alignment:
Q  94 ttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggtttt 151  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||    
T  20770653 ttgcagttatgtatgcgatgtacctaactcgactctatatgcatgtggtaccagtttt 20770710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 12385382 - 12385288
Alignment:
Q  129 tatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaat 222  Q
    |||||||||||||||    |||||||| || || | |||||||||| |||||||||||||| ||| |||||||| ||||  ||||||||||||||    
T  12385382 tatatgcatgtggtattaattttggatgtctgagtaatgttaccgagttatcccccatcttcaaatcacatcttcaaatgtgactgaccatgaat 12385288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 25267238 - 25267291
Alignment:
Q  120 actcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccga 174  Q
    |||||||||||||| ||||||||||| ||||| |||||| || ||||||||||||    
T  25267238 actcgactctatatacatgtggtacc-gttttagatatcggagttatgttaccga 25267291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 9565073 - 9565036
Alignment:
Q  195 acatctttaaatcggactgaccatgaatgcatgaacac 232  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  9565073 acatcgttaaataggactgaccatgaatgcatgaacac 9565036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 15691335 - 15691376
Alignment:
Q  105 gatgcaatgtcccta-actcgactctatatgcatgtggtacc 145  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  15691335 gatgcaatgtccctacactcgactatatatgcatgtggtacc 15691376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 34644956 - 34644891
Alignment:
Q  123 cgactctatatgcatgtggtaccg-gttttggatatcagaattatgttaccgatttatcccccatc 187  Q
    ||||| ||||||||||||||||||  ||||||||||| || |||||||||||| | ||||| ||||    
T  34644956 cgactatatatgcatgtggtaccgttttttggatatcggagttatgttaccgagtgatccctcatc 34644891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 9609818 - 9609862
Alignment:
Q  101 tatggatgcaatgtccctaactcgactctatatgcatgtggtacc 145  Q
    |||| ||| ||||| ||||||| ||||||||||||||||||||||    
T  9609818 tatgtatggaatgtacctaacttgactctatatgcatgtggtacc 9609862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 11509963 - 11509747
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||| |||||| | | |||||||| ||||||||||     
T  11509963 tcattgaatatcacatctttaaataggtacacatcttaatatatcacatcttttaattacacatcttc-aaatagtcatacagttatgtatgcaatgtct 11509865  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaatcggactgacc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  11509864 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttattgatttatcccccatctttaaacacatctttaaatcggactgacc 11509765  T
Q  217 atgaatgcatgaacacca 234  Q
    ||||||||||||||||||    
T  11509764 atgaatgcatgaacacca 11509747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 18148951 - 18148735
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | || ||||| ||||||||||     
T  18148951 tcattgaatatcacatctttaaatatgtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtct 18148853  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaatcggactgacc 216  Q
    |||||||||||||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  18148852 ctaactcgactctatatgcatgtggtaccggttttgaatatctgagttatgttactgatttatcccccatctttaaacacatctttaaatcagactgacc 18148753  T
Q  217 atgaatgcatgaacacca 234  Q
    ||||||||||||||||||    
T  18148752 atgaatgcatgaacacca 18148735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 22530338 - 22530124
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    ||||||||||| ||||||||||||| || ||||||||||| |||||| |||||||| ||||||||||| | |||||| | || ||||| ||||||||||     
T  22530338 tcattgaatattacatctttaaatagttgcacatcttaaaatatcacgtcttttaactacacatcttc-agatagacctacaattatgtatgcaatgtct 22530240  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaaatcggactgac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||    
T  22530239 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccacatctttaaatcacatatttaaatcggactgac 22530140  T
Q  216 catgaatgcatgaaca 231  Q
    ||||||||| ||||||    
T  22530139 catgaatgcttgaaca 22530124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 34705766 - 34705977
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||| |||||||||||||||||| | ||||||| |||||| |||||||||||      |||||||||| |||||||| | |||||||| ||||||||||     
T  34705766 tcatcgaatatcacatctttaaacacttacacaacttaaaatatcacatctt------acacatcttc-aaatagacctacagttatgtatgcaatgtct 34705858  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaaatcggactgac 215  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||| ||||||||||| ||||||||||||||||||||||    
T  34705859 ctaactcaactctatctgcatgtggtaccggttttggatatcagagttatgttactgattaatcctccatctttaaatcacatctttaaatcggactgac 34705958  T
Q  216 catgaatgcatgaacacca 234  Q
    |||||||||||||||||||    
T  34705959 catgaatgcatgaacacca 34705977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 21860761 - 21860584
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 113  Q
    ||||||||||||||||| |||||||||| |||||||| || || ||  | |||||| |||||||||||||| ||||||||||||| ||||| ||||||||    
T  21860761 acatcattgaatatcacgtctttaaatagttacacatatttaaatagtatatctttaaattacacatcttc-aaatagacttgcaattatgtatgcaatg 21860663  T
Q  114 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa 193  Q
    |||||||||||||| |||||| ||||| |||   ||||||||||||||  |||||||| || ||||||||||||||||||    
T  21860662 tccctaactcgactatatatgaatgtgttactaattttggatatcagatgtatgttactga-ttatcccccatctttaaa 21860584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 13694170 - 13694274
Alignment:
Q  33 ctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctata 132  Q
    |||||||||| |||||||||| || |  ||| ||||||||| |||||||||| |||||||||||||  |||| |||||||||||||||||||| ||||||    
T  13694170 ctttaaataaatacacatctttaaatgacacgtcttttaatcacacatcttc-aaatagacttgcaaatatgtatgcaatgtccctaactcgattctata 13694268  T
Q  133 tgcatg 138  Q
    ||||||    
T  13694269 tgcatg 13694274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 3377724 - 3377797
Alignment:
Q  87 aatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccgg-ttttggatatca 159  Q
    |||| |||||||| |||| ||||||||| ||||||||||||||||| ||| | |||||||| ||||||||||||    
T  3377724 aatacacttgcagatatgtatgcaatgtacctaactcgactctatacgcacgcggtaccggtttttggatatca 3377797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 21501091 - 21501014
Alignment:
Q  117 ctaactcgactctatatgcatgtggtacc-ggttttggatatcagaattatgttaccgatttatcccccatctttaaa 193  Q
    |||| ||||||||||||||||||||||||  ||||| ||| || || |||||||||||||| ||||  ||||||||||    
T  21501091 ctaattcgactctatatgcatgtggtaccaagttttagatgtcggagttatgttaccgattgatccttcatctttaaa 21501014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 6019331 - 6019275
Alignment:
Q  120 actcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatt 176  Q
    |||||| |||||||||||||||||||  |||||||| || || ||||||||||||||    
T  6019331 actcgattctatatgcatgtggtaccatttttggatgtcggagttatgttaccgatt 6019275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 13386703 - 13386753
Alignment:
Q  123 cgactctatatgcatgtggtaccggttttggatatcagaattatgttaccga 174  Q
    ||||| ||||||| |||||||||| |||||||||||||| ||||||||||||    
T  13386703 cgactttatatgcttgtggtaccg-ttttggatatcagagttatgttaccga 13386753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 19194024 - 19193976
Alignment:
Q  123 cgactctatatgcatgtggtaccggttttggatatcagaattatgttacc 172  Q
    |||||||||| ||||||||||||  |||||||||||||| ||||||||||    
T  19194024 cgactctatacgcatgtggtacca-ttttggatatcagagttatgttacc 19193976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 52272638 - 52272852
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||||| || ||||||||||     
T  52272638 tcattgaatatcgcatctttaaatatttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagaactgcagttgtgtatgcaatgtct 52272736  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaatcggactgacc 216  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  52272737 ctaactcgactctatatgcatgtggtatcggttttggatatcatagttatgttactgatttatcccacatctttaaacacatctttaaatcggactgacc 52272836  T
Q  217 atgaatgcatgaacac 232  Q
    ||||||||||||||||    
T  52272837 atgaatgcatgaacac 52272852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 61 - 232
Target Start/End: Original strand, 12785022 - 12785199
Alignment:
Q  61 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttg-------g 153  Q
    |||||||||||||||||||||||| |||||||| | || ||||| |||||||||| ||||||||||||||||||||||||||||||||||||       |    
T  12785022 cacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcag 12785120  T
Q  154 atatcagaattatgttaccgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacac 232  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12785121 atatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacac 12785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 41138127 - 41138001
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaa 205  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  41138127 atgcaatgtccttaacttgactctatatgcatgtggtaccagttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaa 41138028  T
Q  206 tcggactgaccatgaatgcatgaacac 232  Q
    |||||||||||||||||||||||||||    
T  41138027 tcggactgaccatgaatgcatgaacac 41138001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 23633398 - 23633272
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaa 204  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||    
T  23633398 atgcaatgtcactaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccccatctttaaatcacatctttaa 23633299  T
Q  205 atcggactgaccatgaatgcatgaaca 231  Q
    |||||||||||||||||| ||||||||    
T  23633298 atcggactgaccatgaattcatgaaca 23633272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 106 - 234
Target Start/End: Complemental strand, 9132647 - 9132518
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||| |||||||||||    
T  9132647 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaggtatgttactgatttatcccccatctttaaatcacatctttaa 9132548  T
Q  205 atcggactgaccatgaatgcatgaacacca 234  Q
    |||||||| || ||||||||||||||||||    
T  9132547 atcggactaactatgaatgcatgaacacca 9132518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 89878 - 89988
Alignment:
Q  34 tttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatat 133  Q
    ||||||||||||||  |||| || |  ||||| |||||||||||||||||| || || ||||||||| ||| ||||||||||||||||||||||||||||    
T  89878 tttaaataattacatgtctttaaatcacacatgttttaattacacatcttc-aagtaaacttgcagtaatgtatgcaatgtccctaactcgactctatat 89976  T
Q  134 gcatgtggtacc 145  Q
    |||||| |||||    
T  89977 gcatgtagtacc 89988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 18515036 - 18514938
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatc-ttaaattat-cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaa 111  Q
    ||||||||||||||||||||||||||||||||||  || ||| ||  | || ||||||||||||||||||||| || |||||||||||||||| ||||||    
T  18515036 acatcattgaatatcacatctttaaataattacatgtctttacatcgtacatatcttttaattacacatcttc-aagtagacttgcagttatgtatgcaa 18514938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 18249972 - 18249887
Alignment:
Q  61 cacatcttttaattacacatcttcgaaatagacttgcagt--tatggatgcaatgtccctaactcgactctatatgcatgtggtacc 145  Q
    ||||||||| ||||| |||||||  ||||||||||| |||  |||| ||| ||||||| ||||||||||||||||||||||||||||    
T  18249972 cacatctttaaattaaacatctta-aaatagacttgtagtgttatgtatgtaatgtccttaactcgactctatatgcatgtggtacc 18249887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 19474476 - 19474425
Alignment:
Q  110 aatgtccctaactcgactctatatgcatgtggtaccggttttggatatcaga 161  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  19474476 aatgtccctaacttgactctatatgcatgtggtaccgtttttgaatatcaga 19474425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 18250004 - 18249965
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatctt 53  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  18250004 acatcaatgaatatcacatctttaaatagttacacatctt 18249965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 9882232 - 9882449
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    ||||||||||||||||||||||| | ||| |||||||||| ||||||||| ||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  9882232 tcattgaatatcacatctttaaacacttaaacatcttaaaatatcacatcatttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 9882330  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaaatcggactgac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  9882331 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgattaatcccccatctttaaatcacatctttaaatcggactgac 9882430  T
Q  216 catgaatgcatgaacacca 234  Q
    |||||||||||||||||||    
T  9882431 catgaatgcatgaacacca 9882449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 40387489 - 40387712
Alignment:
Q  8 agatggacatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggat 107  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||||||| ||    
T  40387489 agatgcacgtcattgaatatcacatctttaaatagttacacatcttaaattatcagatcttttaattacacatcttc-aaatagacctacagttatgtat 40387587  T
Q  108 gcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaaat 206  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| ||||||| ||||||||||||| |||||||||||||    
T  40387588 gcaatgtttctaactcgactctatatgcatgtggtaccagttttggatattagagttatgttactgatttat-ccccatctttaaatcacatctttaaat 40387686  T
Q  207 cggactgaccatgaatgcatgaacac 232  Q
    |||||| |||||||||||||||||||    
T  40387687 cggacttaccatgaatgcatgaacac 40387712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 1216744 - 1216867
Alignment:
Q  111 atgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaatcgga 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||||    
T  1216744 atgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatcttattgatttatcccccatctttaaacacatgtttaaatcgga 1216843  T
Q  211 ctgaccatgaatgcatgaacacca 234  Q
    || |||||||||||||||||||||    
T  1216844 ctaaccatgaatgcatgaacacca 1216867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 42145381 - 42145553
Alignment:
Q  62 acatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcaga 161  Q
    |||||||||||| |||||| ||| ||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |    
T  42145381 acatcttttaatcacacatattc-aaatagatttgtagttatatatgcaatgtccctaactcgactctatatgcatgtggtactgattttggatatcaaa 42145479  T
Q  162 attatgttaccgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaacacca 234  Q
      |||||||| |||||||| |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  42145480 ggtatgttactgatttatctcccatctttaaatcacatcattaaatcggactgaccaagaatgcatgaacacca 42145553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 17289632 - 17289671
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtacc 145  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17289632 atgcaatgtccctaactcgactctatatgcatgtggtacc 17289671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 4860638 - 4860588
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatctttta 71  Q
    |||||||||||||||||||||||    ||||||||||||| ||||||||||||||    
T  4860638 tcattgaatatcacatctttaaa----tacacatcttaaaatatcacatctttta 4860588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 42145299 - 42145378
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagact 94  Q
    ||||||| || |||||| |||||||||| |||||||||||  | || |||| |||||||| |||||||||| |||||||||    
T  42145299 acatcatcgagtatcacgtctttaaatatttacacatctttgaataacacaacttttaatcacacatcttc-aaatagact 42145378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 39437286 - 39437069
Alignment:
Q  16 atcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtc 115  Q
    |||||||||||||  ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  39437286 atcattgaatatcgtatctttaaatagttacacattttaaaatatcacatcttttaattacacatcttc-aaatagacatgcagttatgtatgcaatgtc 39437188  T
Q  116 cctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaatcggactgac 215  Q
     ||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||||    
T  39437187 tctaactcgactttatatgcatgtggtaccggttttggatattagagttatattactgatttatcccacatctttaaacacatctttaaatcggactgac 39437088  T
Q  216 catgaatgcatgaacacca 234  Q
    |||||||||||||||||||    
T  39437087 catgaatgcatgaacacca 39437069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 29497130 - 29497057
Alignment:
Q  109 caatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatccc 182  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||  |||||||| ||||||||||    
T  29497130 caatgtcgctaactcgactatatatgcatgtggtaccagttttgtatatcagaggtatgttactgatttatccc 29497057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 27273153 - 27273201
Alignment:
Q  123 cgactctatatgcatgtggtaccggttttggatatcagaattatgttacc 172  Q
    ||||||||||||||||||||||| |||||||||||| || ||||||||||    
T  27273153 cgactctatatgcatgtggtacc-gttttggatatcggagttatgttacc 27273201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 19049409 - 19049455
Alignment:
Q  123 cgactctatatgcatgtggtaccggttttggatatcagaattatgtta 170  Q
    ||||||||||||||||||||||| |||||||||||| || ||||||||    
T  19049409 cgactctatatgcatgtggtacc-gttttggatatcggagttatgtta 19049455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 137
Target Start/End: Original strand, 32039818 - 32039849
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcat 137  Q
    ||||||||||||||||||||||||||||||||    
T  32039818 atgcaatgtccctaactcgactctatatgcat 32039849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 29497055 - 29497018
Alignment:
Q  197 atctttaaatcggactgaccatgaatgcatgaacacca 234  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  29497055 atctttaaattagactgaccatgaatgcatgaacacca 29497018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 61 - 234
Target Start/End: Complemental strand, 19770312 - 19770140
Alignment:
Q  61 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcag 160  Q
    |||||||||||||||||||||||| |||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19770312 cacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcag 19770214  T
Q  161 aattatgttaccgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacacca 234  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19770213 agttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacacca 19770140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 19891695 - 19891909
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||| |||||||||||||| |||||||| | || ||||| ||||||||||     
T  19891695 tcattgaatatcacatctttaaataggtacacatcttaaaatatcacatctttaaattacacatcttc-aaatagacctacacttatgtatgcaatgtct 19891793  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaatcggactgacc 216  Q
    |||||||||||||||||||||||||||||||||||||||||  || ||||||||| ||||||| ||||||||||||| |||||| ||||| ||||||||     
T  19891794 ctaactcgactctatatgcatgtggtaccggttttggatat--gagttatgttactgatttataccccatctttaaatacatctctaaattggactgact 19891891  T
Q  217 atgaatgcatgaacacca 234  Q
    | ||||||||||||||||    
T  19891892 acgaatgcatgaacacca 19891909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 9547622 - 9547831
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    ||||||||||||||||||||||||| | ||||||||| ||  |||||||||| ||||||||||||||| |||||||| | |||||||| ||||||||||     
T  9547622 tcattgaatatcacatctttaaatagtcacacatcttgaaacatcacatcttataattacacatcttc-aaatagacctacagttatgtatgcaatgtct 9547720  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaaatcggactgac 215  Q
    |||||||||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||    
T  9547721 ctaactcgactctacatgcatgtggtaccggttttggatatcaaagttatgttactgatttat-ccccatctttaaatcacatctttaaatcgaactgac 9547819  T
Q  216 catgaatgcatg 227  Q
    |||| |||||||    
T  9547820 catgcatgcatg 9547831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 22468810 - 22468951
Alignment:
Q  100 ttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa------ 193  Q
    ||||| ||||||||| |||||||||||||||||||||||| ||||   ||||||||||||||  | |||||| ||||||| |||||||||||||          
T  22468810 ttatgtatgcaatgttcctaactcgactctatatgcatgtagtacatattttggatatcagaggtgtgttactgatttat-ccccatctttaaatcttaa 22468908  T
Q  194 --cacatctttaaatcggactgaccatgaatgcatgaacacca 234  Q
       |||||||||||||||| |||||||||||||||||||||||    
T  22468909 attacatctttaaatcggattgaccatgaatgcatgaacacca 22468951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 12876176 - 12876106
Alignment:
Q  124 gactctatatgcatgtggtaccg-gttttggatatcagaattatgttaccgatttatcccccatctttaaa 193  Q
    ||||||||||| ||||||||||  ||||||||| ||||| |||||||||||| | ||||||||||||||||    
T  12876176 gactctatatgtatgtggtaccatgttttggatgtcagagttatgttaccgagtaatcccccatctttaaa 12876106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 19565316 - 19565277
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtacc 145  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  19565316 atgcaatgtctctaactcgaatctatatgcatgtggtacc 19565277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 20738985 - 20738946
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtacc 145  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  20738985 atgcaatgtgcctaactcggctctatatgcatgtggtacc 20738946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 22468752 - 22468806
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatctt 68  Q
    ||||||||||||| |||||||| ||||| ||||||||||| || || ||||||||    
T  22468752 acatcattgaataacacatcttaaaatagttacacatctttaaataacacatctt 22468806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 17729507 - 17729544
Alignment:
Q  122 tcgactctatatgcatgtggtaccggttttggatatca 159  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  17729507 tcgactatatatgcatgtggtaccgtttttggatatca 17729544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 106674 - 106885
Alignment:
Q  18 cattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccc 117  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| |    
T  106674 cattgaatatcacatcttaaaataattacacttcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctc 106772  T
Q  118 taactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaaatcggactgacc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||  ||| |||||||| |||||||||||||| | |||||     
T  106773 taactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttat-tcccgtctttaaatcacatctttaaatcagtctgact 106871  T
Q  217 atgaatgcatgaac 230  Q
    ||||||||||||||    
T  106872 atgaatgcatgaac 106885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 172684 - 172468
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    ||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||| | ||| |||||||| |  | ||||| ||| ||||||     
T  172684 tcattgagtatcacatctttaaatagttacatatcgtaaaatatcacatcttttaattacaccttttc-aaatagacctataattatgtatgtaatgtct 172586  T
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaatcggactgacc 216  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  172585 ctaactcgactctatatgcatgtgatatcggttttggatatcatagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 172486  T
Q  217 atgaatgcatgaacacca 234  Q
    ||||||||||||||||||    
T  172485 atgaatgcatgaacacca 172468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 99 - 231
Target Start/End: Original strand, 15300 - 15432
Alignment:
Q  99 gttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacat 198  Q
    |||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  15300 gttatgtaagcaatgtctctaactcgactctatatgcatgtagtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacat 15399  T
Q  199 ctttaaatcggactgaccatgaatgcatgaaca 231  Q
    |||||||||||||||||||||||||||||||||    
T  15400 ctttaaatcggactgaccatgaatgcatgaaca 15432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 20264813 - 20264687
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaacacatctttaaa 205  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| | |||||| ||||||||| ||||||||||||| |||||||||||||||||||    
T  20264813 atgcaatgtccctaactcgactctatatgcatgtggtacttgttttgaacatcagagttatgttactgatttatcccccagctttaaacacatctttaaa 20264714  T
Q  206 tcggactgaccatgaatgcatgaacac 232  Q
    |||||||||||||||||||||||||||    
T  20264713 tcggactgaccatgaatgcatgaacac 20264687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 16092412 - 16092541
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaa 204  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||||||||||    
T  16092412 atgcaatgtccctaactcgactatatatgtatgtggtaccggttttgaatatcagagttatgttactgatttatcccccatctttaaatcacatctttaa 16092511  T
Q  205 atcggactgaccatgaatgcatgaacacca 234  Q
    |||||||||| |||||||||||||||||||    
T  16092512 atcggactgatcatgaatgcatgaacacca 16092541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 32625671 - 32625541
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatctt-aaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaat 112  Q
    |||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  32625671 acataattgaatatcacatctttaaataattacacgtctttaaatta-cacatcttttaattacacatcttc-aagtagacttgcagttatgtatgcaat 32625574  T
Q  113 gtccctaactcgactctatatgcatgtggtacc 145  Q
    |||||||||||||||||||||||||||||||||    
T  32625573 gtccctaactcgactctatatgcatgtggtacc 32625541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 34892182 - 34892295
Alignment:
Q  22 gaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaac 121  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| |||||    
T  34892182 gaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctctaac 34892280  T
Q  122 tcgactctatatgca 136  Q
    |||||||||||||||    
T  34892281 tcgactctatatgca 34892295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 38991701 - 38991788
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||| |||||||||||    
T  38991701 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaggtatgttactgatttatcctccatctttaaa 38991788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 27401814 - 27401699
Alignment:
Q  118 taactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaaatcggactgacc 216  Q
    |||||||||||||||||| |||| ||||| ||||||||||||||  |||| | | ||| ||| ||||||||||||| ||||||||||||||||||||| |    
T  27401814 taactcgactctatatgcttgtgataccgattttggatatcagaggtatgctcctgatgtattccccatctttaaatcacatctttaaatcggactgatc 27401715  T
Q  217 atgaatgcatgaacac 232  Q
    |||||| |||||||||    
T  27401714 atgaatacatgaacac 27401699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 20178635 - 20178711
Alignment:
Q  61 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatg 138  Q
    ||||||||||||| |||||||||| |||| ||| |||| ||||| |||||||||||||||||||||||||||||||||    
T  20178635 cacatcttttaatcacacatcttc-aaattgacatgcaattatgtatgcaatgtccctaactcgactctatatgcatg 20178711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 22385814 - 22385899
Alignment:
Q  106 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa 193  Q
    |||||||||  | ||||||||||||||  |||||| |||||||| |||||||||||  |||||||| ||||||||| |||||||||||    
T  22385814 atgcaatgtttcaaactcgactctata--catgtgataccggttatggatatcagaggtatgttactgatttatcctccatctttaaa 22385899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 29890519 - 29890563
Alignment:
Q  116 cctaactcgactctatatgcatgtggtacc-ggttttggatatca 159  Q
    |||||||||||||||||||||||||||||| |||||| |||||||    
T  29890519 cctaactcgactctatatgcatgtggtaccaggttttagatatca 29890563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 30613327 - 30613283
Alignment:
Q  117 ctaactcgactctatatgcatgtggtaccggttttggatatcaga 161  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||    
T  30613327 ctaactcgactttatatgcatgtggtaccttttttggatatcaga 30613283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 16092227 - 16092297
Alignment:
Q  14 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttc 84  Q
    |||||||| ||||||||||||| ||||| |||||| | || || || ||||||| |||||| |||||||||    
T  16092227 acatcattaaatatcacatcttaaaatagttacactttttcaaataacacatctattaattccacatcttc 16092297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 12012 - 12139
Alignment:
Q  17 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 116  Q
    |||||||||  |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  12012 tcattgaatgacacatccttaaatagttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 12110  T
Q  117 ctaactcgactctatatgcatgtggtacc 145  Q
    |||||||||||||||||||||||||||||    
T  12111 ctaactcgactctatatgcatgtggtacc 12139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 9784 - 9875
Alignment:
Q  141 gtaccggttttggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaaca 231  Q
    |||||||||||| |||||||| ||||||||| ||||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||    
T  9784 gtaccggttttgaatatcagagttatgttactgatttatcccccatctttaaatcatatctttagatcggaccgaccatgaatgcatgaaca 9875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 221835 - 221894
Alignment:
Q  86 aaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtacc 145  Q
    ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  221835 aaatatacttgcagttatgtatgcaatgtcactaactcgactctatatgcatgtggtacc 221894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 429 - 353
Alignment:
Q  151 tggatatcagaattatgttaccgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcat 226  Q
    ||||||||| | ||||||||| ||||||||| ||||||||||| |||||||||||||  ||||||||||||||||||    
T  429 tggatatcaaagttatgttactgatttatcctccatctttaaatcacatctttaaatatgactgaccatgaatgcat 353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 66752 - 66695
Alignment:
Q  106 atgcaatgtccctaactcgactctatatg--catgtggtaccggttttggatatcaga 161  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||    
T  66752 atgcaatgtccctaactcgactctatatgcacatgtcgtaccggttttggatatcaga 66695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 67021 - 66953
Alignment:
Q  16 atcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttc 84  Q
    |||||||||||||||||||| ||||| |||||  |||| || || |||||| |||||||| ||| ||||    
T  67021 atcattgaatatcacatcttaaaatagttacatttctttaaataacacatcctttaattaaacagcttc 66953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 22871 - 22899
Alignment:
Q  117 ctaactcgactctatatgcatgtggtacc 145  Q
    |||||||||||||||||||||||||||||    
T  22871 ctaactcgactctatatgcatgtggtacc 22899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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