View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_203 (Length: 245)
Name: NF9595A_low_203
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_203 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 8349390 - 8349163
Alignment:
| Q |
19 |
tctttgtcatcttagaatctaatccaacattggaaaaatattggaaatcacatgaattgagttataagtaccctcaaattttataacataataattggat |
118 |
Q |
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| T |
8349390 |
tctttgtcatcttagtatctaatccaacattggaaaaatattggaaatcacatgaattgagctataagtaccctcaaattttataacataataattggat |
8349291 |
T |
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| Q |
119 |
gagttat-ctttccagcttcgggtagacatcgattgtagtcgctgaatgcatctccatctgccacaccatggatatatcttcgtgcatattcaacattat |
217 |
Q |
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| T |
8349290 |
gagttattctttccagctttgggtagacatcgattgtagtcgctgaatgcatttccatctgccacaccatggatatatcttcgtgcatattcaacattat |
8349191 |
T |
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| Q |
218 |
tactcattttcattctcccaggataagg |
245 |
Q |
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| T |
8349190 |
tactcattttcattctcccgggataagg |
8349163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 8482899 - 8483082
Alignment:
| Q |
19 |
tctttgtcatcttagaatctaatccaacattggaaaaatattggaaatcacatgaattgagttataagtaccctcaaattttataacataataattggat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
8482899 |
tctttgtcatcttagaatctaatccaacattggaaacatattggaaatcacataaattgagttataagtaccctcaaattttagaacataataattgaat |
8482998 |
T |
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| Q |
119 |
gagtta-tctttccagcttcgggtagacatcgattgtagtcgctgaatgcatctccatctgccacaccatggatatatcttcgt |
201 |
Q |
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| T |
8482999 |
gagttattctttccagctccgggtagacatcgattggagtcggtgaatgcatctctctctgccacaccatggacatatcttcgt |
8483082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 8355443 - 8355254
Alignment:
| Q |
19 |
tctttgtcatcttagaatctaatccaacattggaaaaatattggaaatcacatgaattgagttataagt--------accctcaaattttataacataat |
110 |
Q |
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| T |
8355443 |
tctttgtcatcttagaatctaatccaacattggaaacatattggaaatcacataaattga---ataagttaatcgaaaccctcaaattttagaacataat |
8355347 |
T |
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| Q |
111 |
aattggatgagttat-ctttccagcttcgggtagacatcgattgtagtcgctgaatgcatctccatctgccacaccatggatatatcttcgtg |
202 |
Q |
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| T |
8355346 |
aattggataagttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggacatatcttcgtg |
8355254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 8531843 - 8531790
Alignment:
| Q |
31 |
tagaatctaatccaacattggaaaaatattggaaatcacatgaattgagttata |
84 |
Q |
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| T |
8531843 |
tagaatctaatccaacattggaaaaatactagaaatcttaggaattgagttata |
8531790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 8351865 - 8351801
Alignment:
| Q |
20 |
ctttgtcatcttagaatctaatccaacattggaaaaatattggaaatcacatgaattgagttata |
84 |
Q |
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| T |
8351865 |
ctttgtcgtcatataatctaatccaacattgtaaaaataatagaaattacaggaattgagttata |
8351801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 8357020 - 8356967
Alignment:
| Q |
31 |
tagaatctaatccaacattggaaaaatattggaaatcacatgaattgagttata |
84 |
Q |
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| T |
8357020 |
tagaatctaattcaacattgtaaaaatactagaaattacaggaattgagttata |
8356967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 1169525 - 1169626
Alignment:
| Q |
127 |
tttccagcttcgggtagacatcgattgtagtcgctgaatgcatctccatctgccacaccatggatatatcttcgtgcatattcaacattattactcattt |
226 |
Q |
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| T |
1169525 |
tttcaagctttggctagagatcgattggagcggctgaatgcatctccatctgccacaccctggacatatcttcgtgtatattcagcattgttattcattt |
1169624 |
T |
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| Q |
227 |
tc |
228 |
Q |
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| T |
1169625 |
tc |
1169626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 7287239 - 7287292
Alignment:
| Q |
31 |
tagaatctaatccaacattggaaaaatattggaaatcacatgaattgagttata |
84 |
Q |
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| T |
7287239 |
tagaatctaatccaagattgtaaaaatagtagaaatcaaaggaattgagttata |
7287292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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