View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_205 (Length: 245)
Name: NF9595A_low_205
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_205 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 189090 - 188893
Alignment:
| Q |
23 |
gatacttcatttaactgtatataaaattgcaggtatctgtattctttgacataattttcattattcaacattatgtcctttatcctgataaaaaatcctc |
122 |
Q |
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| T |
189090 |
gatacttcatttaactgtatacaaaattgcaggtatctgtattctttgacataattttcattattcaacattatgtcctgtatcctgataaaaaatcctc |
188991 |
T |
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| Q |
123 |
caaattggtgaccaccaccgaggatgaagatcaaatcagagagcacctcaacaggccttctgatgaatctccatcagagaatgtgtgacatgttttgg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
188990 |
caaattggtgaccaccaccgaggatgaagatcaaatcagagagcacctcaacaggccttctgatgaatctccatcagagaatgtgtgacatgttttgg |
188893 |
T |
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