View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_206 (Length: 245)
Name: NF9595A_low_206
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_206 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 14592884 - 14593111
Alignment:
| Q |
19 |
cacttaacacttgtccaatttctacaatgcattcaaatcaataaaagagaataaattaatttgttactcaatatcaaatacacaataaattcatagacaa |
118 |
Q |
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| T |
14592884 |
cacttaacacttgtccaatttctacaatgcattcaaagcaataaaagagaataaattaatttgttactcaatatcaaatacacaataaattcatagacac |
14592983 |
T |
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| Q |
119 |
-ctactaagttacctccaacgagattctctaaaagctgatactcttcactcaaattaagatctttgaagtcaatgaaaaaaggttttaaccaattttgac |
217 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14592984 |
gctactaagttaccttcaacgacattctctaaaagctgatactcttcactcaaattaagatctttgaagtcaatgaaaaaaggttttagtcaattttgac |
14593083 |
T |
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| Q |
218 |
aacatatcaaagctgcaaccattgtcgg |
245 |
Q |
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|||||||||||||| || |||||||||| |
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| T |
14593084 |
aacatatcaaagcttcagccattgtcgg |
14593111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 13308685 - 13308458
Alignment:
| Q |
19 |
cacttaacacttgtccaatttctacaatgcattcaaatcaataaaagagaataaattaatttgttactcaatatcaaatacacaataaattcatagaca- |
117 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13308685 |
cacttaacacttgtccgatttctacaatgcattcaaatcaatataagggaataaattaatttgttactcaatatcaaatacacaataaattcatagacac |
13308586 |
T |
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| Q |
118 |
actactaagttacctccaacgagattctctaaaagctgatactcttcactcaaattaagatctttgaagtcaatgaaaaaaggttttaaccaattttgac |
217 |
Q |
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| T |
13308585 |
actaataaattacctccaacgacattctctaaagcctgatactcttcactcaaattaagatctttgaagtcaatgaaagaaggttttagccaattttgac |
13308486 |
T |
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| Q |
218 |
aacatatcaaagctgcaaccattgtcgg |
245 |
Q |
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| T |
13308485 |
aacatatcaaagcttcagccattgtcgg |
13308458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 21281588 - 21281677
Alignment:
| Q |
19 |
cacttaacacttgtccaatttctacaatgcattcaaatcaataaaagag-aataaattaatttgttactcaatatcaaatacacaataaa |
107 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |||||| |
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| T |
21281588 |
cacttaacacttgtccaatttctgcaatgcgttcaaatcaataaaagagaaataaattaatttattattcaatatcaaatacaaaataaa |
21281677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 22348190 - 22348117
Alignment:
| Q |
158 |
actcttcactcaaattaagatctttgaagtcaatgaaaaaaggttttaaccaattttgacaacatatcaaagct |
231 |
Q |
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| T |
22348190 |
actcttcactcaaatttagatctttgaagtcgacgaaagatggtttcagccaattttgagtacaaatcaaagct |
22348117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 21281730 - 21281794
Alignment:
| Q |
120 |
tactaagttacctccaacgagattctctaaaagctgatactcttcactcaaattaagatctttga |
184 |
Q |
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| T |
21281730 |
tactaaattacctttaacgacattctctaacaattgatactcttcactcaaattaatagctttga |
21281794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 22598757 - 22598677
Alignment:
| Q |
151 |
agctgatactcttcactcaaattaagatctttgaagtcaatgaaaaaaggttttaaccaattttgacaacatatcaaagct |
231 |
Q |
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| T |
22598757 |
agctcatactcttcactcaaatttagatctttgaagtcgacgaaagatggtttcagccaattctgagtacaaatcaaagct |
22598677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 306510 - 306571
Alignment:
| Q |
151 |
agctgatactcttcactcaaattaagatctttgaagtcaatgaaaaaaggttttaaccaatt |
212 |
Q |
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| T |
306510 |
agctcatacttttcactcaaatttagatctttgaagtcgacgaaagatggtttcaaccaatt |
306571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 6837692 - 6837724
Alignment:
| Q |
156 |
atactcttcactcaaattaagatctttgaagtc |
188 |
Q |
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| T |
6837692 |
atactcttcactcaaatttagatctttgaagtc |
6837724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 187
Target Start/End: Complemental strand, 16001122 - 16001086
Alignment:
| Q |
151 |
agctgatactcttcactcaaattaagatctttgaagt |
187 |
Q |
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|||| |||||||||||||||||| ||||||||||||| |
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| T |
16001122 |
agctcatactcttcactcaaatttagatctttgaagt |
16001086 |
T |
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