View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9595A_low_210 (Length: 245)
Name: NF9595A_low_210
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_210 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 28529534 - 28529769
Alignment:
| Q |
7 |
tcgaagaatatttcaatatgaaaatgccagtactctcctgctacnnnnnnnngttgtaag--tttactcaccatttcccattcattgtgtgcaggacttt |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28529534 |
tcgaaaaatatttcaatatgaaaatgccagtactctcctgctactttcttttgttgttataatttactcaccatttcccattcattgtgtgcaggacttt |
28529633 |
T |
|
| Q |
105 |
aattgtattgctatcgactggagaatgacagaaacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaattt |
204 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28529634 |
aattgtattgctattgactggagaatgacagaaacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaattt |
28529733 |
T |
|
| Q |
205 |
ctcaatat----ctatgaagcaccgacacatacatg |
236 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| |
|
|
| T |
28529734 |
ctcaatatctagctatgaagcaccgacacatgcatg |
28529769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 27926778 - 27926707
Alignment:
| Q |
137 |
aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttctca |
208 |
Q |
| |
|
|||||||||| | ||||||||||| | |||| |||| ||| |||| |||||||||||||||||||||||||| |
|
|
| T |
27926778 |
aacacttgttgtacttagaagcataactgatattgtgtatctcttgaacattcttctccaggtaatttctca |
27926707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 28056415 - 28056486
Alignment:
| Q |
137 |
aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttctca |
208 |
Q |
| |
|
|||||| ||| | ||||||||||| | |||| |||| ||| |||| |||||||||||||||||||||||||| |
|
|
| T |
28056415 |
aacactagttatacttagaagcataactgatgttgtgtatctcttgaacattcttctccaggtaatttctca |
28056486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 28087056 - 28087123
Alignment:
| Q |
137 |
aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaattt |
204 |
Q |
| |
|
|||||||||| | ||||||||||| | ||| |||| ||| |||| |||||||||||||||||||||| |
|
|
| T |
28087056 |
aacacttgttgtacttagaagcataaccgatgttgtgtatctcttgaacattcttctccaggtaattt |
28087123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 1435719 - 1435790
Alignment:
| Q |
137 |
aacacttgttttgcttagaagcatgaatgattttgtatatttcttaaacattcttctccaggtaatttctca |
208 |
Q |
| |
|
|||||||||||| ||||||||||| |||| |||| ||| || | ||||||||||| |||||||||||||| |
|
|
| T |
1435719 |
aacacttgttttacttagaagcatatttgatgttgtgtatctcctgaacattcttcttcaggtaatttctca |
1435790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University