View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_226 (Length: 242)
Name: NF9595A_low_226
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_226 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 79200 - 78991
Alignment:
| Q |
19 |
acataaaagatatagattcctgaaaattggacatgtcaattattaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
79200 |
acataaaagatatagattcctgaaaattggacatgtcaattattaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctc |
79101 |
T |
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| Q |
119 |
tagagttccatatccacctgcataagttaattcagaaaatttaatattgagaaacataaaatacaccatccatgattataatctgaattgtaacatcaat |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
79100 |
cagagttccatatccccctgcataagttaattcagaaaattcaatattgagaaacataaaatacaccatccatgattataatctgaattgtaacatcaat |
79001 |
T |
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| Q |
219 |
gttttttagg |
228 |
Q |
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|||||||||| |
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| T |
79000 |
gttttttagg |
78991 |
T |
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Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 40887084 - 40887293
Alignment:
| Q |
19 |
acataaaagatatagattcctgaaaattggacatgtcaattattaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40887084 |
acataaaagatatagattcctgaaaattggacatgtcaattattaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctc |
40887183 |
T |
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| Q |
119 |
tagagttccatatccacctgcataagttaattcagaaaatttaatattgagaaacataaaatacaccatccatgattataatctgaattgtaacatcaat |
218 |
Q |
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| T |
40887184 |
cagagttccatatccccctgcataagttaattcagaaaattcaatattgagaaacataaaatacaccatccatgattataatctgaattgtaacatcaat |
40887283 |
T |
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| Q |
219 |
gttttttagg |
228 |
Q |
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|||||||||| |
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| T |
40887284 |
gttttttagg |
40887293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 28269615 - 28269696
Alignment:
| Q |
60 |
attaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctctagagttccatatccacctgcat |
141 |
Q |
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| T |
28269615 |
attaccggtttgtcgtgaatcccaagttgagcccaggttatgacttcaagaagctcctctagagtcccataaccacctgcat |
28269696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 21627898 - 21627833
Alignment:
| Q |
72 |
tcatgaattccaagttgagcccatgttatgacttcaagaagttcctctagagttccatatccacct |
137 |
Q |
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| T |
21627898 |
tcatggatgccaagctgagcccaagttatgacctcaagaagttcctcaagtgtcccatagccacct |
21627833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 40461699 - 40461775
Alignment:
| Q |
61 |
ttaccggcttgtcatgaattccaagttgagcccatgttatgacttcaagaagttcctctagagttccatatccacct |
137 |
Q |
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| T |
40461699 |
ttaccggtttatcatggatgccaagttgagcccatgttatcacctcaaggagctcctcaagtgtcccatacccacct |
40461775 |
T |
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