View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_227 (Length: 242)
Name: NF9595A_low_227
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_227 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 224
Target Start/End: Complemental strand, 33791189 - 33790973
Alignment:
| Q |
8 |
agatggacatcattaacagttgatactaatccatcacgtcttcctgtaggaacattgtaacttggtccaccagctaagacaactgaatctcttgttgcta |
107 |
Q |
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| T |
33791189 |
agatgtacatcattaacagttgatactaatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaacagaatctcttgttgcta |
33791090 |
T |
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| Q |
108 |
atgatattatgtctgcacatgaaactgttgatggacatgcattttctaggattcttttgatttcatctatgaggttatatcctcttacagtaaggtttgc |
207 |
Q |
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| T |
33791089 |
atgatattatgtctgcacatgaaactgttgatggacatgcattttctaggattcttttgatttcatctatgaggttatatcctcttacagtaaggtttgc |
33790990 |
T |
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| Q |
208 |
tcttgctgctttctctg |
224 |
Q |
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||||||||||||||||| |
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| T |
33790989 |
tcttgctgctttctctg |
33790973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 33764098 - 33764212
Alignment:
| Q |
34 |
taatccatcacgtcttcctgtaggaacattgtaacttggtccaccagctaagacaactgaatctcttgttgctaatgatattatgtctgcacatgaaact |
133 |
Q |
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|||||| ||||||||||||||||||| |||||| ||||||| |||| |||| | || | ||||||||| || | || || ||||||||||||||||| |
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| T |
33764098 |
taatccgtcacgtcttcctgtaggaatattgtattttggtcctccagataaggccacagcatctcttgtagcaagtgctacgatgtctgcacatgaaacc |
33764197 |
T |
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| Q |
134 |
gttgatggacatgca |
148 |
Q |
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| T |
33764198 |
gttgatggacatgca |
33764212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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