View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_231 (Length: 241)
Name: NF9595A_low_231
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_231 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 53984801 - 53985024
Alignment:
| Q |
9 |
gagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagacg |
108 |
Q |
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| T |
53984801 |
gagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagacg |
53984900 |
T |
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| Q |
109 |
tgtgtagaggtagatctaccaaattaaattaaatcgacaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatgt |
208 |
Q |
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| T |
53984901 |
tgtgtagaggtagatttaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatgt |
53985000 |
T |
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| Q |
209 |
tgaagcacgtctggcatccacttc |
232 |
Q |
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|||||||||||| ||||||||||| |
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| T |
53985001 |
tgaagcacgtctagcatccacttc |
53985024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 53971096 - 53971315
Alignment:
| Q |
9 |
gagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagacg |
108 |
Q |
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| T |
53971096 |
gagatgaaatacatgtcggaacattttgtgggtcctgccaattgtcctcataaattccatcctccatctcctacaataagacggagggggtagtaagaca |
53971195 |
T |
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| Q |
109 |
tgtgtagaggtagatctaccaaattaaattaaatcgacaaattatccttatcata-tcttaaacctgatgaatggtaagatgttgaagtttgggactatg |
207 |
Q |
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| T |
53971196 |
tgt--agaggtatatttaccaaattaaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggactatg |
53971293 |
T |
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| Q |
208 |
ttgaagcacgtctggcatccac |
229 |
Q |
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|| ||||||||| |||||||| |
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| T |
53971294 |
ttagagcacgtctagcatccac |
53971315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 19935421 - 19935380
Alignment:
| Q |
168 |
aaacctgatgaatggtaagatgttgaagtttgggactatgtt |
209 |
Q |
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| T |
19935421 |
aaacctgatgaatggtaagattttgaagtttgggacaatgtt |
19935380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 19966560 - 19966519
Alignment:
| Q |
168 |
aaacctgatgaatggtaagatgttgaagtttgggactatgtt |
209 |
Q |
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| T |
19966560 |
aaacctgatgaatggtaagattttgaagtttgggacaatgtt |
19966519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 31014529 - 31014482
Alignment:
| Q |
168 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagca |
215 |
Q |
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|||||| ||||||| ||||||||||||| |||||||| |||||||||| |
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| T |
31014529 |
aaaccttatgaatgataagatgttgaagcttgggactgtgttgaagca |
31014482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 34036358 - 34036297
Alignment:
| Q |
168 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctggcatccac |
229 |
Q |
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|||||| ||||||| ||||||||||||| |||||||| |||||||||| ||| |||||||| |
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| T |
34036358 |
aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctagcatccac |
34036297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 6688157 - 6688093
Alignment:
| Q |
168 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctggcatccacttc |
232 |
Q |
| |
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|||||| ||||||| ||||||||||||| |||||||| |||||||||| ||| |||||||||| |
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| T |
6688157 |
aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctaccatccacttc |
6688093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 16163998 - 16164058
Alignment:
| Q |
169 |
aacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctggcatccac |
229 |
Q |
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|||||||||||||| |||||||| ||| ||||| || ||||||||||| ||| |||||||| |
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| T |
16163998 |
aacctgatgaatggcaagatgttcaagcttgggcctctgttgaagcacttctagcatccac |
16164058 |
T |
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