View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_236 (Length: 240)
Name: NF9595A_low_236
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_236 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 39578753 - 39578552
Alignment:
| Q |
20 |
aaaatcaagggacaacaatcaacacgcaagtgtctccatgaactgttttgtagatagctcacttctctgttttgtccctgtttcgccccttagttaatgg |
119 |
Q |
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| T |
39578753 |
aaaatcaagggacaacaatcaacacgcaagtgtctccatgaactgttttgtagatagctcacttctctgttttgtccctgtttccccccttagttaatgg |
39578654 |
T |
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| Q |
120 |
ttgttggtctgttctcaattgtaagattaataatggagtaaaacagtattcattttcaagtgattatatgaagatctatgtatggtagaatgttgtgatt |
219 |
Q |
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| T |
39578653 |
ttgttggtctgttctcaattgtaagattaataatggagtaaaacagtattcattttcaagtgattatatgaagatctatgtatggtagaatgttgtgatt |
39578554 |
T |
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| Q |
220 |
tt |
221 |
Q |
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|| |
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| T |
39578553 |
tt |
39578552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 39542384 - 39542302
Alignment:
| Q |
21 |
aaatcaagggacaacaatcaacacgcaagtgtctccatgaactgttttgtagatagctcacttctctgttttgtccctgtttc |
103 |
Q |
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| T |
39542384 |
aaatcaaggtacaacaatcaacacgcaagtgtctccatgagctgttttttcaatacctcatttctctgttttgtccttgtttc |
39542302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 39574219 - 39574183
Alignment:
| Q |
21 |
aaatcaagggacaacaatcaacacgcaagtgtctcca |
57 |
Q |
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| T |
39574219 |
aaatcaaggcacaacaatcaacacgcaaatgtctcca |
39574183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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