View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_24 (Length: 427)
Name: NF9595A_low_24
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 6 - 420
Target Start/End: Complemental strand, 47797588 - 47797174
Alignment:
| Q |
6 |
agttcttacacaacaaaacacaataagccaatgcaagaggaacgaataaggcgtgcgcaaaatgcttttaacagagaaaggaataagtacaatggaggct |
105 |
Q |
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| T |
47797588 |
agttcttacacaacaaaacacaataagccaatgcaagaggaactaataaggcgtgcgcaaaacgcttttaacagagaaaggaataagtacagtggaggct |
47797489 |
T |
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| Q |
106 |
ttgaaagatggaaggaacatgctcccaatcagcatttccaaacagaatatccgtatccgaagaatgatacttcatacaaagacaggagaactagttatcg |
205 |
Q |
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| T |
47797488 |
ttgaaagttggaaggaacatgctcccaatcagcatttccaaacagaatattcatatccgaagaatgatacttcatacaaagacaggagaactagttatcg |
47797389 |
T |
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| Q |
206 |
agaaacaccgagagaaagtgtaaactatgcattatcacatcactactcagttttgggtcttgacatgtataggaaagcgccgtattcagatgatgagatt |
305 |
Q |
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| T |
47797388 |
agaaacaccgagagaaagtggaaactatgcattgtcacatcactactcagttttgggtcttgacatgtataggaaagcgccgtattcagatgatgagatt |
47797289 |
T |
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| Q |
306 |
aaggtaactttgtttttctcacaatgccttgcacattacttttattgttttgttatattggtacgcgcatcaaaatcatcttgatacaagtttttcatct |
405 |
Q |
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| T |
47797288 |
aaggtaactttttttttctcacaatgccttgcacattacttttattgttttgttatattggtacgcgcatcaaaatcatcttgatacaagtttttcatct |
47797189 |
T |
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| Q |
406 |
cattttactctcggt |
420 |
Q |
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| T |
47797188 |
cattttactctcggt |
47797174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 43 - 270
Target Start/End: Complemental strand, 47803734 - 47803498
Alignment:
| Q |
43 |
aggaacgaataaggcgtgcgcaaaatgcttttaacagagaaaggaataagtacaatggaggctttgaaagatggaaggaacatgctcccaa--------- |
133 |
Q |
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| T |
47803734 |
aggaacgaataaggcgtatgcaaaacgtgtttaacagagaaagaaataaattcaaaagagggtacgaaagctggagggaacatggtcccaacgcatatca |
47803635 |
T |
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| Q |
134 |
tcagcatttccaaacagaatatccgtatccgaagaatgatacttcatacaaagacaggagaactagttatcgagaaacaccgagagaaagtgtaaactat |
233 |
Q |
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| T |
47803634 |
tcaacatttccaaagagaagattggtattggaagactgataattcatacagagacaggaggactaattatcgagaaactccaagagagagcggaaactat |
47803535 |
T |
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| Q |
234 |
gcattatcacatcactactcagttttgggtcttgaca |
270 |
Q |
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| T |
47803534 |
gccttatcacatcactactcagttttgggtcttgaca |
47803498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 275 - 345
Target Start/End: Complemental strand, 47803056 - 47802987
Alignment:
| Q |
275 |
taggaaagcgccgtattcagatgatgagattaaggtaactttgtttttctcacaatgccttgcacattact |
345 |
Q |
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| T |
47803056 |
taggaaagcaccatattcagatgcagagattaaggtaactttatttt-ctcacaatgccttgcacattact |
47802987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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