View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_246 (Length: 238)
Name: NF9595A_low_246
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_246 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 46844907 - 46844684
Alignment:
| Q |
13 |
tagagaggttgagtggagtagcacagagatcaaaatcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtc |
112 |
Q |
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| T |
46844907 |
tagagaggtcgagttgagaagcagagagatcaaaatcaagcactttgatataagatttctgaggattatttcatattctaagtccattgaagcaaaggtc |
46844808 |
T |
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| Q |
113 |
aaattgtttttgtttaggtggaattatgtcacatactcaatcatcgttagcttccaatttgggcatcttttgtgttatataggcatcacgtcctccaaca |
212 |
Q |
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| T |
46844807 |
aaattgtttttgtttaggtggaattatgtcacatactcaatcatccttagcttccaatttaggcatc--ttgtgctatataggcatcacgtcctccaaca |
46844710 |
T |
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| Q |
213 |
acatcctctggtcacggcattcatgg |
238 |
Q |
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|||||||||||||||||||||||||| |
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| T |
46844709 |
acatcctctggtcacggcattcatgg |
46844684 |
T |
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