View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_247 (Length: 238)
Name: NF9595A_low_247
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_247 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 45123340 - 45123577
Alignment:
| Q |
1 |
agtattattttctagttgttattggacaatgatcatagtttcgtcgccgctttttgaagtttccacctatgttgtgattgtgtttctttattttctctat |
100 |
Q |
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| T |
45123340 |
agtattattttctagttgtcattggacaatgatcatagtttcgtctccgctttttgaagtttctacctatgttgtgattgtgtttctttattttctctat |
45123439 |
T |
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| Q |
101 |
gttgatcttttccaacacaattttgtcttcaactatgaaaaatgtttctcaaatgtatccttctatgaatgtctattacagaatattatgaatattagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45123440 |
gttgatcttttccaacacaattttgtcttcaactatgaaaaatgtttctcaaatatatccttctatgaatgtctattacaaaatattatgaatattagtg |
45123539 |
T |
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| Q |
201 |
atgatgtattgattaaatgtatttttaacggtcttcat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
45123540 |
atgatgtattgattaaatgtatttttaacggtcttcat |
45123577 |
T |
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