View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_253 (Length: 235)
Name: NF9595A_low_253
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_253 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 235
Target Start/End: Complemental strand, 44560507 - 44560280
Alignment:
| Q |
8 |
aacatagacactaacaagtcacacctataaaatatgagaaaattaaataattcaatctaaatacatgtgtcagtgtcatgatggacacttacacgtgtta |
107 |
Q |
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| T |
44560507 |
aacatagacactaacaagtcacacctataaaatatgagaaaattaaataattcaatctaaatacatgtgtcagtgtcatgttggacacttacacgtgtta |
44560408 |
T |
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| Q |
108 |
gacactgggacacatcttcaaatagaagtgttgatgctacaaagactaagggtgcgtttgattcacaaagtagtaagtcctggacagaacgatgtaagac |
207 |
Q |
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| T |
44560407 |
gacactgggacacatcttcaaatagaagtgttgatgctacaaagactaagggtgcgtttgattcacaaaatagtaagtactggacagaacaatgcaagac |
44560308 |
T |
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| Q |
208 |
aaaacagaactgtactctaaataaaaag |
235 |
Q |
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| T |
44560307 |
aaaacagaactgtactctgaataaaaag |
44560280 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 39433573 - 39433524
Alignment:
| Q |
157 |
gggtgcgtttgattcacaaagtagtaagtcctggacagaacgatgtaaga |
206 |
Q |
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| T |
39433573 |
gggtgcgttcgattcacaaaatagtaagtactggacagaacagtgtaaga |
39433524 |
T |
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