View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_261 (Length: 232)
Name: NF9595A_low_261
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_261 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 43239340 - 43239109
Alignment:
| Q |
1 |
gaaaagctgccaagagccaattagcataagctgtgtagagtccaataacaaagagcaatatgataccccatgtccaacctaatgaaaccattatcaggtt |
100 |
Q |
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| T |
43239340 |
gaaaagctgccaagagccaattagcataagctgtgtagagtccaataacaaagagcaatatgataccccatgtccaacctaatggaaccattatcaggtt |
43239241 |
T |
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| Q |
101 |
agagaaactgaatatccaaccacagttgaagcctgtcaccaacatcaaccccacttgttgccatgaatctgcaaattgaatgaaacactcattaatgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43239240 |
agagaaactgaatatccaaccacagttgaagcctgtcaccaacatcaaccccacttgttgccatgaatctgcaaattgaatgaaacacccattaatgatg |
43239141 |
T |
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| Q |
201 |
ttaacaattactaacaaaacagcatagaaaaa |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
43239140 |
ttaacaattactaacaaaacagcatagaaaaa |
43239109 |
T |
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