View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9595A_low_266 (Length: 230)
Name: NF9595A_low_266
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_266 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 36433582 - 36433806
Alignment:
| Q |
6 |
aggatggtggttcagcaatctggtttctttcaaatattaatgtgggacaatnnnnnnngtcaatggaaccagttctattcacaaccaacaaaccaatgcg |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
36433582 |
aggatggtggttcagcaatctggtttctttcaaatattaatgtgggacaataaaaaaagtcaatggaaccagttctattcacaaccaacaaaccaatgtg |
36433681 |
T |
|
| Q |
106 |
ataactatggaacatgtggatcaaacagtaattgtgaccctatgaactttgcggacttcaaatgtgcttgtttacctggttttgaacccaaatctccagg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36433682 |
ataactatggaacatgtggatcaaacagtaattgtgaccctatgaactttgcggacttcaaatgtgcttgtttacctggttttgaacccaaatctccagg |
36433781 |
T |
|
| Q |
206 |
cgattggtatgagagtggagatggg |
230 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
36433782 |
cgattggtatgagagtggagatggg |
36433806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 36404260 - 36404469
Alignment:
| Q |
21 |
caatctggtttctttcaaatattaatgtgggacaatnnnnnnngtcaatggaaccagttctattcacaaccaacaaaccaatgcgataactatggaacat |
120 |
Q |
| |
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||||||||||||||||||||||| | ||||| ||| ||||||||||| |||||||||| |||||||| ||||||| |||||||||||||||| |
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| T |
36404260 |
caatctggtttctttcaaatattcacgtgggggaatgaaaagaatcaatggaaccggttctattcagaaccaacagaccaatgtgataactatggaacat |
36404359 |
T |
|
| Q |
121 |
gtggatcaaacagtaattgtgaccctatgaactttgcggacttcaaatgtgcttgtttacctggttttgaacccaaatctccaggcgattggtatgagag |
220 |
Q |
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|||||||||||||||||||||||||| | ||||||| ||||| || || ||||||||| |||||||||||| |||| |||| | |||||||||||||| |
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| T |
36404360 |
gtggatcaaacagtaattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttttgaaccaaaatttccacgtgattggtatgagag |
36404459 |
T |
|
| Q |
221 |
tggagatggg |
230 |
Q |
| |
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| |||||||| |
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| T |
36404460 |
tagagatggg |
36404469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 36397321 - 36397536
Alignment:
| Q |
15 |
gttcagcaatctggtttctttcaaatattaatgtgggacaatnnnnnnngtcaatggaaccagttctattcacaaccaacaaaccaatgcgataactatg |
114 |
Q |
| |
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|||||||||||||||||| |||||||||| | ||| ||||| ||||||||||| ||||| ||| |||||||||||||||| |||||||||| |
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| T |
36397321 |
gttcagcaatctggtttcattcaaatattcacttggaacaatcaaaagagtcaatggaacaggttctggtcagaaccaacaaaccaatgtgataactatg |
36397420 |
T |
|
| Q |
115 |
gaacatgtggatcaaacagtaattgtgaccctatgaactttgcggacttcaaatgtgcttgtttacctggttttgaacccaaatctccaggcgattggta |
214 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||| | |||| || || | ||||||| |||||||||||| |||| |||| |||||||||| |
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| T |
36397421 |
gaacgtgtggatcaaacagtaattgtgaccctttgaactttgagaactttaagtgcacgtgtttacttggttttgaaccaaaatttccaagcgattggta |
36397520 |
T |
|
| Q |
215 |
tgagagtggagatggg |
230 |
Q |
| |
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||||||| |||||||| |
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| T |
36397521 |
tgagagtagagatggg |
36397536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 36373573 - 36373797
Alignment:
| Q |
6 |
aggatggtggttcagcaatctggtttctttcaaatattaatgtgggacaatnnnnnnngtcaatggaaccagttctattcacaaccaacaaaccaatgcg |
105 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||| | ||| ||||| ||||||||||| ||||| || |||||||||||||||| | |
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| T |
36373573 |
aggatagttgttcagcaatctggtttctttcaaatattcacttggaacaatcaaaaaagtcaatggaacaggttctggtctgaaccaacaaaccaatgtg |
36373672 |
T |
|
| Q |
106 |
ataactatggaacatgtggatcaaacagtaattgtgaccctatgaactttgcggacttcaaatgtgcttgtttacctggttttgaacccaaatctccagg |
205 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||||| || ||| ||||| |||| ||||||||||| |||| |||| | |
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| T |
36373673 |
ataactatggaacctgtggatcaaacagtaactgtgaccctttgaactttgaggactttaagtgtacttgtctaccaggttttgaaccaaaatttccacg |
36373772 |
T |
|
| Q |
206 |
cgattggtatgagagtggagatggg |
230 |
Q |
| |
|
|||||||||||||| |||||||| |
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|
| T |
36373773 |
tgattggtatgagagaagagatggg |
36373797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 36411559 - 36411783
Alignment:
| Q |
6 |
aggatggtggttcagcaatctggtttctttcaaatattaatgtgggacaatnnnnnnngtcaatggaaccagttctattcacaaccaacaaaccaatgcg |
105 |
Q |
| |
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||||| |||||||||||||||||||||||||||| ||| |||||||||| | ||||||||| || || || || |||||||| ||||||| | |
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|
| T |
36411559 |
aggatagtggttcagcaatctggtttctttcaaacattcatgtgggacagtcaagagagtcaatggagccggtactggtctgaaccaacagaccaatgtg |
36411658 |
T |
|
| Q |
106 |
ataactatggaacatgtggatcaaacagtaattgtgaccctatgaactttgcggacttcaaatgtgcttgtttacctggttttgaacccaaatctccagg |
205 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||| ||||||||| | ||| || ||| ||||||||| |||||||||||| |||| |||| | |
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|
| T |
36411659 |
ctaactacggaacatgtggaccaaacagtaattgtgaccctttgaactttgagagctttaagtgtacttgtttacttggttttgaaccaaaatttccacg |
36411758 |
T |
|
| Q |
206 |
cgattggtatgagagtggagatggg |
230 |
Q |
| |
|
||||||||||||||| |||||||| |
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| T |
36411759 |
tgattggtatgagagtagagatggg |
36411783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 36416890 - 36417114
Alignment:
| Q |
6 |
aggatggtggttcagcaatctggtttctttcaaatattaatgtgggacaatnnnnnnngtcaatggaaccagttctattcacaaccaacaaaccaatgcg |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||| |||||||||| | ||||||||| || || || || |||||||| ||||||| | |
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|
| T |
36416890 |
aggatagtggttcagcaatctggtttctttcaaacattcatgtgggacagtcaagagagtcaatggagccggtactggtctgaaccaacagaccaatgtg |
36416989 |
T |
|
| Q |
106 |
ataactatggaacatgtggatcaaacagtaattgtgaccctatgaactttgcggacttcaaatgtgcttgtttacctggttttgaacccaaatctccagg |
205 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||| ||||||||| | ||| || ||| ||||||||| |||||||||||| |||| |||| | |
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|
| T |
36416990 |
ctaactacggaacatgtggaccaaacagtaattgtgaccctttgaactttgagagctttaagtgtacttgtttacttggttttgaaccaaaatttccacg |
36417089 |
T |
|
| Q |
206 |
cgattggtatgagagtggagatggg |
230 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
36417090 |
tgattggtatgagagtagagatggg |
36417114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 36425731 - 36425949
Alignment:
| Q |
12 |
gtggttcagcaatctggtttctttcaaatattaatgtgggacaatnnnnnnngtcaatggaaccagttctattcacaaccaacaaaccaatgcgataact |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | |||||||| | | ||||||| || || || || |||||||| ||||||| | ||||| |
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| T |
36425731 |
gtggttcagcaatctggtttctttcaaacattcacgtgggacagtcaaaagagccaatggagccggtactggtctgaaccaacagaccaatgtgctaact |
36425830 |
T |
|
| Q |
112 |
atggaacatgtggatcaaacagtaattgtgaccctatgaactttgcggacttcaaatgtgcttgtttacctggttttgaacccaaatctccaggcgattg |
211 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||| ||||||||| | |||| || ||| ||||||||| |||||| ||||| |||| |||| | ||||| |
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|
| T |
36425831 |
acggaacatgtggatcaaatagtaattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggtttcgaaccaaaatttccacgagattg |
36425930 |
T |
|
| Q |
212 |
gtatgagagtggagatggg |
230 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
36425931 |
gtatgagagtcgagatggg |
36425949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 36368962 - 36369168
Alignment:
| Q |
14 |
ggttcagcaatctggtttctttcaaatattaatgtgggacaatnnnnnnngtcaatggaaccagttctattcacaaccaacaaaccaatgcgataactat |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||| | | |||||||||| || || || |||||||| ||||||| ||||||||| |
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|
| T |
36368962 |
ggttcagcaatctggtttctttcaaacattcatgtgggacagtcaaaagagccaatggaaccggtactggtctgaaccaacagaccaatgtgataactat |
36369061 |
T |
|
| Q |
114 |
ggaacatgtggatcaaacagtaattgtgaccctatgaactttgcggacttcaaatgtgcttgtttacctggttttgaa-cccaaatctccaggcgattgg |
212 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | | ||||||| ||||| || || ||||||||| |||||||||| | |||| |||| | |||||| |
|
|
| T |
36369062 |
ggaacctgtggatcaaacagtaattgtgacctttttaactttgaagactttaagtgcacttgtttacttggttttgaagcaaaaatttccacgtgattgg |
36369161 |
T |
|
| Q |
213 |
tatgaga |
219 |
Q |
| |
|
||||||| |
|
|
| T |
36369162 |
tatgaga |
36369168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 36387633 - 36387741
Alignment:
| Q |
107 |
taactatggaacatgtggatcaaacagtaattgtgaccctatgaactttgcggacttcaaatgtgcttgtttacctggttttgaacccaaatctccaggc |
206 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | ||||||| ||||| || ||| ||||||||| ||||| ||||||||||| |||| | |
|
|
| T |
36387633 |
taactatggaacatgtggatcaaatggtaattgtgacccttttaactttgatgactttaagtgttcttgtttacttggttatgaacccaaatttccacgt |
36387732 |
T |
|
| Q |
207 |
gattggtat |
215 |
Q |
| |
|
||||||||| |
|
|
| T |
36387733 |
gattggtat |
36387741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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