View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_269 (Length: 230)
Name: NF9595A_low_269
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_269 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 36434378 - 36434149
Alignment:
| Q |
1 |
aatatcagccttaaaaataacgatgaaatataaagatctggagatatcatccttaaaaataaattacataccctttgnnnnnnncttccatttgcaatac |
100 |
Q |
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| T |
36434378 |
aatatcagccttaaaaataacgatgaaatataaagatctggagatatcatccttaaaaataaattacataccctttgtttttttcttccacttgcaatac |
36434279 |
T |
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| Q |
101 |
acacaggagaggacgaggacgataacagcaactatagaagctaccaaaattgcagccaaccttttcttatgagggactccgttgctttttctgtagtaat |
200 |
Q |
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| T |
36434278 |
acacaggagaggacgaggacgataacagcaactatagaagctaccaaaattgcagccaaccttttcttatgagggactccgttgctttttctgtagtaat |
36434179 |
T |
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| Q |
201 |
tggctgtgaagcagacaaaggacacataag |
230 |
Q |
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| T |
36434178 |
tggctgagaagacgaaaaagtacacataag |
36434149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 36388245 - 36388142
Alignment:
| Q |
100 |
cacacaggagaggacgaggacgataacagcaactatagaagctaccaaaattgcagccaaccttttcttatgagggactccgttgctttttctgtagtaa |
199 |
Q |
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| T |
36388245 |
cacacaggagaggaggaggacaatt---gcaattatagaagctacaagaattgcagccaacctctttttatcaagaactccttttcgttttctgtagtaa |
36388149 |
T |
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| Q |
200 |
ttggctg |
206 |
Q |
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| T |
36388148 |
ttggctg |
36388142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 36412256 - 36412178
Alignment:
| Q |
128 |
gcaactatagaagctaccaaaattgcagccaaccttttcttatgagggactccgttgctttttctgtagtaattggctg |
206 |
Q |
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| T |
36412256 |
gcaactatagaagctacaagaattgcagctaacctctttttatcaaggactcctttgctttttttgttgtaattagctg |
36412178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 206
Target Start/End: Complemental strand, 36417587 - 36417509
Alignment:
| Q |
128 |
gcaactatagaagctaccaaaattgcagccaaccttttcttatgagggactccgttgctttttctgtagtaattggctg |
206 |
Q |
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| T |
36417587 |
gcaactatagaagctacaagaattgcagctaacctctttttatcaaggactcctttgctttttttgttgtaattagctg |
36417509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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