View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9595A_low_275 (Length: 230)

Name: NF9595A_low_275
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9595A_low_275
NF9595A_low_275
[»] chr3 (9 HSPs)
chr3 (1-45)||(9101182-9101226)
chr3 (142-188)||(9101045-9101091)
chr3 (185-224)||(9100959-9100998)
chr3 (1-45)||(9026108-9026152)
chr3 (1-44)||(9029068-9029111)
chr3 (1-45)||(9023404-9023448)
chr3 (148-187)||(9025981-9026020)
chr3 (148-187)||(9034446-9034485)
chr3 (1-45)||(8746908-8746952)


Alignment Details
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9101226 - 9101182
Alignment:
Q  1 ggcggcgaagatgatgaccataaagaaggggaagaacttcatagc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9101226 ggcggcgaagatgatgaccataaagaaggggaagaacttcatagc 9101182  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 9101091 - 9101045
Alignment:
Q  142 gtgggagatatgagaattgagagggtgtgggggtatttataagggag 188  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  9101091 gtgggagatatgagaattgagagggtgtgggagtatttataagggag 9101045  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 185 - 224
Target Start/End: Complemental strand, 9100998 - 9100959
Alignment:
Q  185 ggagcttgtgaaaatatattatgaatgatttggtcgttag 224  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9100998 ggagcttgtgaaaatatattatgaatgatttggtcgttag 9100959  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9026152 - 9026108
Alignment:
Q  1 ggcggcgaagatgatgaccataaagaaggggaagaacttcatagc 45  Q
    |||||||||||||||||||| |||||||| |||||||||||||||    
T  9026152 ggcggcgaagatgatgaccaaaaagaaggagaagaacttcatagc 9026108  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9029111 - 9029068
Alignment:
Q  1 ggcggcgaagatgatgaccataaagaaggggaagaacttcatag 44  Q
    |||||||||||||||||||| |||||||| ||||||||||||||    
T  9029111 ggcggcgaagatgatgaccaaaaagaaggagaagaacttcatag 9029068  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9023448 - 9023404
Alignment:
Q  1 ggcggcgaagatgatgaccataaagaaggggaagaacttcatagc 45  Q
    |||||||||||||||||||| |||||||| ||||||||| |||||    
T  9023448 ggcggcgaagatgatgaccaaaaagaaggagaagaactttatagc 9023404  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 9026020 - 9025981
Alignment:
Q  148 gatatgagaattgagagggtgtgggggtatttataaggga 187  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  9026020 gatatgagaattgagagggtgtgagagtatttataaggga 9025981  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 187
Target Start/End: Complemental strand, 9034485 - 9034446
Alignment:
Q  148 gatatgagaattgagagggtgtgggggtatttataaggga 187  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  9034485 gatatgagaattgagagggtgtgagagtatttataaggga 9034446  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8746952 - 8746908
Alignment:
Q  1 ggcggcgaagatgatgaccataaagaaggggaagaacttcatagc 45  Q
    |||||||||||||| ||| | |||||||| |||||||||||||||    
T  8746952 ggcggcgaagatgaagacgaaaaagaaggagaagaacttcatagc 8746908  T

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