View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9595A_low_281 (Length: 229)
Name: NF9595A_low_281
Description: NF9595A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9595A_low_281 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 48 - 227
Target Start/End: Original strand, 33450626 - 33450806
Alignment:
| Q |
48 |
ccaattttccattcccccaatttgggg----ggcatgcaatggaatggagcattataatttaaatattacctttttacccctattttattttatcattat |
143 |
Q |
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| T |
33450626 |
ccaattttccattcccccaatttggggtgctggcatggaatagaatggagcattataatttaaatattacctttttacccctattttattttatcattac |
33450725 |
T |
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| Q |
144 |
tgcttccttttcctctcaaatatgctcttcttcctctcaaatacttcgttttttcaatcagtatgtgtctttcttctttgcttt |
227 |
Q |
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| T |
33450726 |
tatttccttttcctctcaaatatgctcttct---tctcaaatacttcgttttttcaatcagtatgtgtctttcttctttgcttt |
33450806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 29166640 - 29166544
Alignment:
| Q |
49 |
caattttccattcccccaatttggggggcatgcaatggaatggagcattataatttaaatattacctttttacccctatttt-attttatcattatt |
144 |
Q |
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| T |
29166640 |
caatttttcattccctcaattcaggttgtatgtaatggaatgaaactttataatttaaatattaccattttacctctattttcgttttatcattatt |
29166544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 19694583 - 19694502
Alignment:
| Q |
61 |
cccccaatttggggggcatgcaatggaatggagcattataatttaaatattacctttttaccccta-ttttattttatcatt |
141 |
Q |
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| T |
19694583 |
cccccaatttggggtgcatgcaatggaatggaactttataattaaaatattaccaatttacccttatttttattttatcatt |
19694502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 49423886 - 49423980
Alignment:
| Q |
49 |
caattttccattcccccaatttggggggcatgcaatggaatggagcattataatttaaatattacctttttacccctattttattttatcattatt |
144 |
Q |
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| T |
49423886 |
caattttacattcccccaatt-ggggtttatgcaatggaatgaagcttcatagtttcaatattaccattttacccctaatttattttatcattatt |
49423980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 16375 - 16336
Alignment:
| Q |
10 |
aaaacgggaggaaacaagaactggagcagatccaaactcc |
49 |
Q |
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| T |
16375 |
aaaactggaggaaacaagaactggagcagatccaaactcc |
16336 |
T |
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